Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00627 ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTGCTTTCAACTGATGCTAAGCCTAGATTAAAGTGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGGGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCGGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACACCAAATGCATCAACTGCCGAGAGACTTTCTGAAACCAATGGAAGTCACATGAACAAATTAAGCCTTGGACCACAGACCAACAAAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAACTTAGGATAGAGGCACAAGGAAAATACCTGCAGTCTGTGTTGGAGAAAGCTCAAGAGACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAGCTGGTGTCCAAAGTCTCATCTCAGTGCCTTAACTCAACATTCTCAGAACTAAAGAAATTGCAAGGATTTTGCCCTCAGCAAACACAAACCAATCAGCCAAACGATTGCTCAGGGGACAGTTGCCTCACGTCCTGTGACAGATCACAAAATGATGGCTTAAGACACTTCAACAGCCATGTATTCATGGAACAAAAGGAGGCCACAGAAGCTCCCAACAACTTTAGGAACTCTGAACTCAAGTGGTGTGATGATGGGAGAAGGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAAAGAAGAAGCTATGCTGTTGAAAGCAGTCCCAGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATGGAAGCAGCATGTATCCTGAGAGACTAATCACAGAAAGCCAATCAAATGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAGCCAGTGAATGAAAAAATTTCTCAAGAGTATATGTTACCTGCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACACTCATGGAGATAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1248 0.4319 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITPNASTAERLSETNGSHMNKLSLGPQTNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSELKKLQGFCPQQTQTNQPNDCSGDSCLTSCDRSQNDGLRHFNSHVFMEQKEATEAPNNFRNSELKWCDDGRRNTFLAPLSKNEERRSYAVESSPSNLSMSIGLERETENGSSMYPERLITESQSNGEFQHRNRIKTETMKPVNEKISQEYMLPASYFAAARLDLNTHGDNEAATTCKQLDLNRFSWN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00627 415 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Cca10g00627 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 415 IPR044848 GO:0003700
Cca10g00627 415 PANTHER MYB-RELATED PROTEIN 2 4 415 - -
Cca10g00627 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Cca10g00627 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Cca10g00627 415 Coils Coil 149 169 - -
Cca10g00627 415 Gene3D - 45 103 - -
Cca10g00627 415 Pfam MYB-CC type transfactor, LHEQLE motif 147 193 IPR025756 -
Cca10g00627 415 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00627 Cca-Chr10 6866629 6868950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00627 78 415 G2-like Transcription Factor Family AT3G04030 51.724 4.87e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca10g00627 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00627 - - gmx:100810396 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00627 10 6866629 6868950 Cca04g00922 04 9823865 9826973 PCT