Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00626 ATGGCGAGCCACAGAATTGGAGAACTTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACCACATCCCTTATGGAGTGCTTCATGGGATTAACACTTCTGCATCAAGTTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAAGAAGCAATTGTTCTGCATGGAGTTAAGGGTGGAAATGATGAGAGCAAAGCATCTTTATTCACAGGCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGGCGGTTCAAAGTCAGGAGGTGAAAGCACTGACTCAGCCCTTTCAAGCAAAACGGAGCCCCCCTTTGAGGCAGAATCTCCAATAAGTAAAAAGGCATCTTGTTCAGATCATCAGGCTTTTTTTGATCTGCAGCAACTTCGACAGGAGATGGCAAGTGATGCCCCAAGAACAGCCTCTACACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGAAAGGGAGCTGGTTCTACATCAGAGAAACCACTTGATGCAAAGACTTTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGCTAGAGTCAAGTAGATTAAAGCTTACCCAGCTAGAACAAGAACTTCAAAGAGCACGCTCTCAGGGCTTGTTTGTGGATTGTGGTGGTGTTGGAAGTAATGTAAGCTCCGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGAACAGCGTCTGATGGGGGAGCTGCGAAACGGGTTGCAGGCACCATTGTCAGATAGTGATATGAGAGTTATGGTGGATGGATATCTTTCACACTATGATGACATTTTCAGGCTCAAAGCTGTTACTGCTAAATCTGATGTTTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATCCAACAGTTGGAGCCACTAGCTGAGCAACAGATAATGGGTATGTATGGGCTGAGACATTCATCACAGCAAGCAGAAGAAGCTCTATCTCAGGGCCTTGAGCAGTTGCAACAGTCTCTGGTGGACACAATAGCTGGAGGCCCAGTCGTTGATGGTGTGCAACAAATGGTTGTTGCTATGGGCAAACTCGCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAATTTGAGGCAACAGACTCTTCATCAGTTATGTCGATTACTGACAGTTCGTCAAGCAGCACGCTGCTTTATTGTCATTGGAGAATACTATGCACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCTAGAGAGACCTTGATTAGCGACGACAACTCATGCCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAATCATTTCTCAAGTTTCTGA 1449 0.4576 MASHRIGELGLSESGPSSHHHIPYGVLHGINTSASSLINQGSAFDFGELEEAIVLHGVKGGNDESKASLFTGRPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSALSSKTEPPFEAESPISKKASCSDHQAFFDLQQLRQEMASDAPRTASTQNQSAAKSPQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARSQGLFVDCGGVGSNVSSGAAMFDMEYARWLEEEQRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDDIFRLKAVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYARLRALSSLWASRPRETLISDDNSCQTTTEMQIVQHSQNHFSSF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00626 482 ProSiteProfiles DOG1 domain profile. 243 451 IPR025422 GO:0006351|GO:0043565
Cca10g00626 482 CDD bZIP_HBP1b-like 180 230 - -
Cca10g00626 482 MobiDBLite consensus disorder prediction 144 182 - -
Cca10g00626 482 Gene3D - 179 228 - -
Cca10g00626 482 PANTHER TRANSCRIPTION FACTOR TGA9 65 461 - -
Cca10g00626 482 SUPERFAMILY Leucine zipper domain 180 223 IPR046347 GO:0003700|GO:0006355
Cca10g00626 482 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700|GO:0006355
Cca10g00626 482 Pfam Seed dormancy control 261 335 IPR025422 GO:0006351|GO:0043565
Cca10g00626 482 PANTHER TRANSCRIPTION FACTOR TGA9 65 461 - -
Cca10g00626 482 MobiDBLite consensus disorder prediction 81 126 - -
Cca10g00626 482 MobiDBLite consensus disorder prediction 89 112 - -
Cca10g00626 482 SMART brlzneu 176 241 IPR004827 GO:0003700|GO:0006355
Cca10g00626 482 Coils Coil 199 226 - -
Cca10g00626 482 Pfam bZIP transcription factor 179 220 IPR004827 GO:0003700|GO:0006355
Cca10g00626 482 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Cca10g00626 482 MobiDBLite consensus disorder prediction 144 162 - -
Cca10g00626 482 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00626 Cca-Chr10 6832004 6839713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00626 152 482 bZIP Transcription Factor Family AT1G08320 72.892 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca10g00626 DOG1 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00626 K14431 - gmx:100775461 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00626 10 6832004 6839713 Cca10g00626 10 6832004 6839713 ECH
Cca10g00626 10 6832004 6839713 Cca04g00918 04 9779283 9787811 PCT