Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00622 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAATCTATGCCTTCAAACCCCTACTAATTTCATAGAGTGGCTCAAACCATCAAATTCAATATCACCATCATCTCCTTCTTCCTTGACTCAGCATGAAACGATCCAGTTTTTGCCCTTCAAGGAAGAGCATGGAGTGCAAAAGGAGGGTTTTGAAGTAAAAGGAGAGAAGGTGGAACAGGTAACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGGCCATGATGAGGATGATGAGAAGAAGGGTTTTCAAGTTAAGGAAGAAGAACCCTTGAAGAAAAGCTTCCAGGGATGTTCTTTTAATCAAGAGAGAAGATTTTGGATACCAACTCCTTCACAGATCCTTGTTGGACCCATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCACATGTGGGGTCACGGGTCCGAATTCAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTGAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAACCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACGCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTCATGTGCCGAAAGTGTTCAAAAACCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAAGACCATATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTCTTGAAGGATTCGTCGAGGATGAGAAGGAGTGTGTTACCGGGTCTGATGAAGATGAAGTTGCTCATGCATGA 888 0.4392 MSFRECNVENKNLCLQTPTNFIEWLKPSNSISPSSPSSLTQHETIQFLPFKEEHGVQKEGFEVKGEKVEQVTVALHIGLPNTGGHDEDDEKKGFQVKEEEPLKKSFQGCSFNQERRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDEDEVAHA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00622 295 Gene3D Classic Zinc Finger 174 265 - -
Cca10g00622 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Cca10g00622 295 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 293 - -
Cca10g00622 295 Gene3D Classic Zinc Finger 131 154 - -
Cca10g00622 295 SUPERFAMILY beta-beta-alpha zinc fingers 202 236 IPR036236 -
Cca10g00622 295 SMART c2h2final6 132 154 IPR013087 -
Cca10g00622 295 SMART c2h2final6 216 236 IPR013087 -
Cca10g00622 295 SMART c2h2final6 179 211 IPR013087 -
Cca10g00622 295 PANTHER ZINC FINGER PROTEIN WIP2 43 293 IPR043584 GO:0003700|GO:0010468
Cca10g00622 295 SUPERFAMILY beta-beta-alpha zinc fingers 101 155 IPR036236 -
Cca10g00622 295 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00622 Cca-Chr10 6772301 6776129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00622 7 285 C2H2 Transcription Factor Family AT1G08290 55.621 2.47e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00622 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00622 - - gmx:100819306 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00622 10 6772301 6776129 Cca10g00622 10 6772301 6776129 ECH
Cca10g00622 10 6772301 6776129 Cca04g00915 04 9714070 9718739 PCT