Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00618 ATGTATAGCAATTTCAAAGAGCAAGCGATAGAGTACGTGAAGCAAGCCGTGCAGGAAGACAATGCAGGAAACTACACGAAAGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGCGCCGAGGAGATTCGCGCCGTCCTCGACGACGGAGGCCCCGGCCCGGCCTCCAACGGGGACGCAGCTGTCGCTGCTAGGCCCAAGACCAAGCCCAAGGACGGCGAGGGCGGCGGCGACGGGGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATTAGAGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTCACTGGTAAAAGACGACCCTGGAGAGCTTTTCTGTTGTATGGACCTCCCGGAACAGGAAAATCGTATTTAGCCAAGGCAGTTGCAACGGAAGCCGAGTCCACATTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGACGAAATAGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCCTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTGAAGGCTCGTCAACACATGTTCAAGGTGCATCTGGGAGATACTCCCCATAACTTGACTGAAAGTGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGTGTAAAGGATGTCTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAGTACAAACCACAATGCAGGAGCTTGCTGCAAAAGGACTTGCTTCTCAGATCCTTCCGCCCCCTATTACAAGAACAGATTTTGATAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAAGTGACCTTGATGTTCACGAGAAATTCACGAAGGAGTTTGGAGAGGAAGGTTGA 1305 0.4927 MYSNFKEQAIEYVKQAVQEDNAGNYTKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQTTMQELAAKGLASQILPPPITRTDFDKVLARQRPTVSKSDLDVHEKFTKEFGEEG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00618 434 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Cca10g00618 434 Gene3D - 299 414 - -
Cca10g00618 434 SMART smart 2 79 IPR007330 -
Cca10g00618 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 430 IPR027417 -
Cca10g00618 434 SMART AAA_5 163 299 IPR003593 -
Cca10g00618 434 Gene3D - 6 75 - -
Cca10g00618 434 CDD AAA 134 297 - -
Cca10g00618 434 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Cca10g00618 434 SUPERFAMILY MIT domain 2 81 IPR036181 -
Cca10g00618 434 MobiDBLite consensus disorder prediction 73 110 - -
Cca10g00618 434 Gene3D - 126 422 IPR027417 -
Cca10g00618 434 MobiDBLite consensus disorder prediction 91 110 - -
Cca10g00618 434 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Cca10g00618 434 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 434 - -
Cca10g00618 434 CDD MIT_VPS4 4 77 IPR045253 -
Cca10g00618 434 Pfam Vps4 C terminal oligomerisation domain 367 431 IPR015415 -
Cca10g00618 434 PANTHER AAA DOMAIN-CONTAINING 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00618 Cca-Chr10 6731700 6737484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00618 162 355 Calmodulin-binding Proteins AT3G56690 37.245 2.55e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00618 K12196 - gmx:100788150 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00618 10 6731700 6737484 Cca10g00618 10 6731700 6737484 ECH
Cca10g00618 10 6731700 6737484 Cca04g00908 04 9663291 9668602 ECH
Cca10g00618 10 6731700 6737484 Cca04g00908 04 9663291 9668602 PCT