Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00604 ATGGATGTTGATTCGCAGCCAGTGATGGATGAAACAATTCTGGTTGGTGATGATTTAATGACGGGGCCTCCATCACCTGTAGTACCATCAGAAATAGCCTCCCATGTACTCCAAGGTGTTGATTTGTGTGATGGAATTCTCAGGAATCTCTTCCTCTGCTTGCAAATCAATGACATCGAACCATTTTGTCAGGATGAAATTGCTTTATATAAACAATGTGCTGAAAGAAGGGATAAGGAGATACGAAAGCGGCTTCAAGATAGTGAATTCAAATTGGGTTCATCAATGCCTCTGGATGAAGCCAAGGGGAGGGCCTCTCAGCTCGAGGCAGAAGTTACATCGCTGGAGAGGCACCTAATTCTTGCTAGTGGAATTGAGGGCATTGAAGGTTTCCGTCAAAGATGGAGCTTGCATGGCCGCCTCACTGATTCCAAAAATAGCTACCAAAATTTGACTCTTGAGGTTGTAACTAGTAAACTGCATTTGAAGATAGAGAGCATCAGAGATCAAATATTGGATGTTGTAGTTGTTGCGATTGCTATTTATCTCGGAATTGGTTTTACAGCAATGCTACCTTGGGAAAAGACCCAAAAAACTTGTCAAAAGCTATTTATCCGAGAATTGGGAGTTGGTCTGGTTAGTGTTGGAATGATGGAAATAGTCAACAATCTAGCGAATATGAAGGTTGTCGCCGCTTACTTGCTGGCAGTATTGGGAGGGAACCAATCCCCTTCTTCCAAAGATATCAAACACATCCTTAGCTCAGttggtgctgaggctgaggatgagttgatcgagttgctcttgactgaagtcaagggcaaagacttcaacgagctacttgctagcggaagggaaaagttgtctgcggtgccttctggtggtgctgctgttgctgtcgctgccgcacctggtgctgccgctggtggtgctgcacctgctgctgaagcaaaggaggagaagaaagaagaGGAGAAGGAGGAGTCTGATGATGACATGGGTTTCGGTTTGTTCGACTAA 1020 0.3431 MDVDSQPVMDETILVGDDLMTGPPSPVVPSEIASHVLQGVDLCDGILRNLFLCLQINDIEPFCQDEIALYKQCAERRDKEIRKRLQDSEFKLGSSMPLDEAKGRASQLEAEVTSLERHLILASGIEGIEGFRQRWSLHGRLTDSKNSYQNLTLEVVTSKLHLKIESIRDQILDVVVVAIAIYLGIGFTAMLPWEKTQKTCQKLFIRELGVGLVSVGMMEIVNNLANMKVVAAYLLAVLGGNQSPSSKDIKHILSSVGAEAEDELIELLLTEVKGKDFNELLASGREKLSAVPSGGAAVAVAAAPGAAAGGAAPAAEAKEEKKEEEKEESDDDMGFGLFD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00604 339 Gene3D - 226 284 IPR038716 -
Cca10g00604 339 CDD Ribosomal_P2 227 339 IPR044076 GO:0002182|GO:0003735|GO:0022625
Cca10g00604 339 Hamap 50S ribosomal protein L12 [rpl12]. 228 339 IPR027534 GO:0003735|GO:0005840|GO:0006414
Cca10g00604 339 Coils Coil 98 118 - -
Cca10g00604 339 PANTHER OS01G0191000 PROTEIN 1 152 - -
Cca10g00604 339 MobiDBLite consensus disorder prediction 309 339 - -
Cca10g00604 339 MobiDBLite consensus disorder prediction 325 339 - -
Cca10g00604 339 Pfam 60s Acidic ribosomal protein 244 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00604 Cca-Chr10 6591602 6599271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00604 227 295 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 75.362 6.27e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00604 - - gmx:100802417 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00604 10 6591602 6599271 Cca10g00604 10 6591602 6599271 ECH