Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00603 ATGGAGGAACACGAGAATGGCGCCAACGCGAGCGAGGAGGAACAGTTGATAGGCCCGGGCCCGGCCCCACGGGCTCGGCCCAAGCGACCCCTTCAGTTCGAGCAGGCCTACCTCGACGCTTTGCCCTCCGCCAACATGTACGAGAAAAGTTATATGCACCGAGATGTGGTTACGCATGTCGCTGTTTCACCTGCGGAATTTTTCATCACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAGGCCTGTTGGTATTGAATTTGCCAAACACTTTAGATCACATCTTGGTCCAATTGAAGGCCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGATCGCTCTGTGAAAATATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATACCCCCGGTGCTATTGAATGGGTTTACAAACAAGGGGATGTCAAAGCTAAGCTTGCCATTAGTGATAGGAACTCGTCTTTTGTGCACATATATGATGCACGAGCTGGTACAAATGATCCTATCATCTCCAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATTCTATATGTGATTCTGTACTTTCGGCAGATGCAAAAGGGATAATTGAATACTGGAGCCCTGATACACTTCAGTTCCCAGAGGATGAGGTCAATTTTAAACTGAAAAGTGATACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTATCGGGTATTGAGGTCAGTCCAGACGGTAAACAATTTTGCATTACATCACCTGACCGTAGGATACGTGTATTTTGGTTCAGAACAGGTAAACTAAGGCGAGTTTATGACGAATCCCTGGAGGTTGCTCAAGACCTCCAAAGAAGTGATGCTCCATTAtatcgTTTGAGGCACGATAGGCCTTTCACAGTATCAATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCGAAGGGAATGGATGTTGTACAGgctatagaaaaagtgaagacagacaagacagataagccatatcaagatgttaaaattctaaatTTTCTTCCTTTAGCTCCACAGGTTTCTTATCAATGTGATGCGCTTTGCATGCCAAAGGAATGCAGTTAG 1185 0.4203 MEEHENGANASEEEQLIGPGPAPRARPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSPAEFFITGSADGHLKFWKKRPVGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYTPGAIEWVYKQGDVKAKLAISDRNSSFVHIYDARAGTNDPIISKEIHMGPIKVMKYNSICDSVLSADAKGIIEYWSPDTLQFPEDEVNFKLKSDTNLFEIAKCKTSVSGIEVSPDGKQFCITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNFLPLAPQVSYQCDALCMPKECS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00603 394 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 307 322 IPR002130 GO:0000413|GO:0003755
Cca10g00603 394 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 335 350 IPR002130 GO:0000413|GO:0003755
Cca10g00603 394 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 322 334 IPR002130 GO:0000413|GO:0003755
Cca10g00603 394 Gene3D - 138 280 IPR015943 GO:0005515
Cca10g00603 394 Gene3D - 36 136 IPR015943 GO:0005515
Cca10g00603 394 SUPERFAMILY WD40 repeat-like 51 281 IPR036322 GO:0005515
Cca10g00603 394 Pfam WD domain, G-beta repeat 53 81 IPR001680 GO:0005515
Cca10g00603 394 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Cca10g00603 394 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 289 372 IPR002130 GO:0000413|GO:0003755
Cca10g00603 394 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 3 301 - -
Cca10g00603 394 SUPERFAMILY Cyclophilin-like 297 375 IPR029000 -
Cca10g00603 394 MobiDBLite consensus disorder prediction 1 28 - -
Cca10g00603 394 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 213 372 IPR002130 GO:0000413|GO:0003755
Cca10g00603 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Cca10g00603 394 Gene3D - 281 374 IPR029000 -
Cca10g00603 394 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 3 301 IPR044666 -
Cca10g00603 394 SMART WD40_4 176 215 IPR001680 GO:0005515
Cca10g00603 394 SMART WD40_4 44 81 IPR001680 GO:0005515
Cca10g00603 394 SMART WD40_4 232 271 IPR001680 GO:0005515
Cca10g00603 394 SMART WD40_4 86 125 IPR001680 GO:0005515
Cca10g00603 394 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 300 372 - -
Cca10g00603 394 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 300 372 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00603 Cca-Chr10 6584196 6589227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00603 295 371 U-box Gene Family AT5G67530 45.455 3.44e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00603 K12736 - gmx:100801887 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00603 10 6584196 6589227 Cca10g00603 10 6584196 6589227 ECH