Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00601 ATGAGTTCTCACAAGAGGAAAGCGGGGAGAAAGAAGTTTCGAGAGACACGTCACCCTGTGTATCGAGGGATTCGTCAAAGAAACGGTAACAAGTGGGTGTGTGAAGTTCGTGAACCCAACAAGAAGTCAAGGATATGGCTTGGGACATACCCTACGCCAGAACTTGCTGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGCACCTCGGCCATATTCAACTTCCCTGACTCAGTTTCTCTTCTTCCAGTTGCAAAGTCTTCTTCTGCTGAAGATATAAGATTGGCTGCATCAAAAGTTTCAAAGGTTTTTGCTCCTTCTTCCTTGTGCAGTTCATCATCTTCGAGGGTTGAGAGTCTTGAGACTACTAAGCCTTGTTTGGTTGATGAAATTGTTAAGAGTAGGAATGATAATGATGAGTCTAATGAATCCGCGTTTTTTGATGAAGAGGCAGTGTATAACATGCCGAGTTTGTTGGATAGTATGGCAGAGGGTCTTCTCATTACACCACCGTCTATGATGAGAGGATTTGATTGGGACCAGGTTGATTGTGAAACCGATCTCACTCTCTGGACAGATTAA 585 0.4462 MSSHKRKAGRKKFRETRHPVYRGIRQRNGNKWVCEVREPNKKSRIWLGTYPTPELAARAHDVAVLALKGTSAIFNFPDSVSLLPVAKSSSAEDIRLAASKVSKVFAPSSLCSSSSSRVESLETTKPCLVDEIVKSRNDNDESNESAFFDEEAVYNMPSLLDSMAEGLLITPPSMMRGFDWDQVDCETDLTLWTD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00601 194 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Cca10g00601 194 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 2 193 - -
Cca10g00601 194 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Cca10g00601 194 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Cca10g00601 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 193 IPR045277 GO:0003700
Cca10g00601 194 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Cca10g00601 194 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Cca10g00601 194 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Cca10g00601 194 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Cca10g00601 194 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00601 Cca-Chr10 6565354 6565938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00601 5 193 AP2-EREBP Transcription Factor Family AT4G25470 47.619 4.21e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00601 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00601 - - gmx:100816109 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00601 10 6565354 6565938 Cca10g00601 10 6565354 6565938 ECH
Cca10g00601 10 6565354 6565938 Cca04g00889 04 9379796 9380625 PCT