Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00598 ATGAATTTCGAGATCGAATCACCATTTTCTTTTCAATCTTCCTCTCTCATATGTACACCACCTAAAAACCCTAACCTAGTTTCAGAAACATCACAATTTGTCTCACACAAAAGGAAAGGGGGAAGAAAGAAGTTCAAGGAGACTCGACACCCTATTTATAGGGGTGTCCGACAAAGGAAGGGAAAATGGGTGTGTGAACTTAGGGAACCAAAGAAGACATCAAGGATTTGGTTAGGGACATACCCTACACCCGAAATGGCAGCTAGGGCACACGATGTGGGTGCCCTAGTAATTAGGGGCACCTCAGCCATATTAAACTTTCCAAATTCACTTTCTTTTCTTCCAATTGTTAACTCATCTTCTTCACATAAAGATATTCGAGCAGCTGCAGCAGAAGCTGCTGAGAGTTTTAGACCTATAACCTCTTTTAACCAAAAGATCGGTCGCAAAACTAAATGTAAGAGATTTACAAAGGTTTCATCAATAGAAGAGAAAAAGAAGAAAACAGTGTTGGAGTCTTCATTGAAGAGCATGCATAGTTTGGATCGTGAAAAATGTGATGCTATCAATAGTGGCACAGAGAAAAGCATTGAGGATTTGTCTTCAACTCATGTGTTCTTTGATGAAGAGGCTTTCTTTAACATGCCAAGTCTCTTGGATAGAATGGCAGAGAGTTTGGGTGTTTTTCCACTACCATATCAGGATTATTTGGATGATTATGCTTATTGCATGGACTTTAATTTATGGACGGATTAA 756 0.3929 MNFEIESPFSFQSSSLICTPPKNPNLVSETSQFVSHKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTSRIWLGTYPTPEMAARAHDVGALVIRGTSAILNFPNSLSFLPIVNSSSSHKDIRAAAAEAAESFRPITSFNQKIGRKTKCKRFTKVSSIEEKKKKTVLESSLKSMHSLDREKCDAINSGTEKSIEDLSSTHVFFDEEAFFNMPSLLDRMAESLGVFPLPYQDYLDDYAYCMDFNLWTD 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00598 251 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Cca10g00598 251 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Cca10g00598 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 250 IPR045277 GO:0003700
Cca10g00598 251 Pfam AP2 domain 51 98 IPR001471 GO:0003700|GO:0006355
Cca10g00598 251 SMART rav1_2 52 114 IPR001471 GO:0003700|GO:0006355
Cca10g00598 251 Gene3D AP2/ERF domain 52 109 IPR036955 GO:0003700|GO:0006355
Cca10g00598 251 ProSiteProfiles AP2/ERF domain profile. 52 108 IPR001471 GO:0003700|GO:0006355
Cca10g00598 251 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 3 250 - -
Cca10g00598 251 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Cca10g00598 251 CDD AP2 51 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00598 Cca-Chr10 6549091 6549846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00598 37 250 AP2-EREBP Transcription Factor Family AT5G51990 40.465 5.79e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00598 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00598 - - var:108332912 362.459