Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00596 ATGAGATTGGAGAAATGCTGGTTTTGCTCGTCGACCGTATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTCGGTTTTGTAGATCCAAATGCCACAAGAACTTTAAAATGAAGAGAAATCCTCGTAAGGTAAAATGGACCAAGGCATATCGACGAGTGCATGGAAAGGATATGACACAGGATTCGACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAAAGATATGACAGGAATCTTGCGGAGAATGTCCTCAAGGCCATTCCTAAGATTGATAAGATCAGAGTCACCAGGGAGGAGAGACACCATAAGAATAGGATGAAAGGCAAAAAGGAGAAGCTGCAGAGGGAGGCAGTGAAGGAGTTGGAGCAGAGCATCAGTTTGGTCAAAGCTCCTTCCGTGCTTCAACAGGATCCATCTCTCACTTTGCCAAAGATCAAAGTCAAGGTTTCCCAAAAGCAATCAGAGGAGAATCATGCCATGGAAGAGTGA 507 0.4418 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLQREAVKELEQSISLVKAPSVLQQDPSLTLPKIKVKVSQKQSEENHAMEE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00596 168 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Cca10g00596 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Cca10g00596 168 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Cca10g00596 168 SMART 4TRASH 6 44 IPR011017 -
Cca10g00596 168 PANTHER BNAA04G10330D PROTEIN 1 168 - -
Cca10g00596 168 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Cca10g00596 168 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Cca10g00596 168 Coils Coil 109 129 - -
Cca10g00596 168 PANTHER 60S RIBOSOMAL PROTEIN L24 1 168 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00596 Cca-Chr10 6527769 6530134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00596 1 168 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 69.048 6.24e-83 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00596 K02896 - gmx:100778077 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00596 10 6527769 6530134 Cca10g00596 10 6527769 6530134 ECH