Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00588 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAGCCGAATTTGAAGCATGCATTCACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAACCAAATGAACCTGTTGTTATCTATGTGAAAGTTGGGGAGCAGAAATTTGTGTTGGGAACCCTTTCCAGGGATAAAATTCCTCAGATATCTCTGGAACTGGTTCTGGAAAAGGAGTTTGAGCTTTCCCACAATTCAAAACATGCCAGTGTTCATTTCTGTGGATACAAGGCTTATTACTCGGGCGATGATAGCGAGGATGAATTTACTGATAGTGATGAGGATCTTCCATTGGTGAATGCGGAGAATGGAAAACCTGAAAAAAAGGCTGAAGACTTGAAGGTACCTGAATCCAAAAAACCTGAGGCCAAGGTTGCTGCATCAGCAAAACAAGTCAAGGTTGTTGATCCTAAGAAAGACGATGAGGAGgattctgatgatgattcagatgaagatggtgattttgatAGTTCTGACGAAGAGATGggggatgctgatggtgatagtgatgaagaaagtgatagtgatgaagatgatgatgaagaGACACCTAAGAAGGTTGATCTGGGGAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCTGTTTCCAAGAAAGCTAAAAATGCAACTCCTGAGAAGACTGATGGCAAGAAAGGTGGACATCAAGCAACTCCACACCCCGTGAAGAAAGGGGGAAAGACTCCCAACAGTGGAGCTAAGGACAAGTCTCCCAAGTCTGGTGGTCTCTCTTGCAAAAGCTGTAGCAAGACTTTCACCTCTGAAAGTGGTCTGCAACAACATAGCAAGGCAAAGCATGGTGGTCAGTGA 885 0.4011 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKPNEPVVIYVKVGEQKFVLGTLSRDKIPQISLELVLEKEFELSHNSKHASVHFCGYKAYYSGDDSEDEFTDSDEDLPLVNAENGKPEKKAEDLKVPESKKPEAKVAASAKQVKVVDPKKDDEEDSDDDSDEDGDFDSSDEEMGDADGDSDEESDSDEDDDEETPKKVDLGKKRPNESASKTPVSKKAKNATPEKTDGKKGGHQATPHPVKKGGKTPNSGAKDKSPKSGGLSCKSCSKTFTSESGLQQHSKAKHGGQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00588 294 MobiDBLite consensus disorder prediction 225 241 - -
Cca10g00588 294 MobiDBLite consensus disorder prediction 116 144 - -
Cca10g00588 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 294 IPR013087 -
Cca10g00588 294 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 290 - -
Cca10g00588 294 MobiDBLite consensus disorder prediction 102 294 - -
Cca10g00588 294 Gene3D Nucleoplasmin core domain 1 100 - -
Cca10g00588 294 Gene3D Classic Zinc Finger 268 294 - -
Cca10g00588 294 MobiDBLite consensus disorder prediction 258 288 - -
Cca10g00588 294 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Cca10g00588 294 ProSitePatterns Zinc finger C2H2 type domain signature. 270 291 IPR013087 -
Cca10g00588 294 MobiDBLite consensus disorder prediction 202 217 - -
Cca10g00588 294 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 290 - -
Cca10g00588 294 MobiDBLite consensus disorder prediction 159 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00588 Cca-Chr10 6416316 6419649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00588 1 291 C2H2 Transcription Factor Family AT5G03740 38.095 5.98e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00588 NPL 1.7e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00588 - - gmx:100795506 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00588 10 6416316 6419649 Cca10g00588 10 6416316 6419649 ECH