Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00583 ATGGGAAGCAAAGACAGCGACCACCACTTGTCCACCGTCCGATCCATCGTCGGTTCCGAATTCACCGACATGGAAATCATCAGAGCCCTACACATGGCCAAAAACGACGTCACTGCAGCAATCAATATCATCTTCGACACGCTCACACCCTCAAAATTCAAACCCACTCGCCCCAGCAATCCGCAGCCGGTTTCTCCTCCAACACCCTCCTCTCCCGCCGTCACCGTCGCCGCCAACTCCAACCATAGTGACGGCGAAGGACGCAGCGTTAATAACCGCGATGATTGGTGGTTCGTGGGTTGCGGCGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGACTTTAAACTGCGGCGAAACGGTGGTTTTCAAATTTCCGACGAAGACGCTCTCGGCTTCGCCTAAGGGGTTCGGACGTGCAGCGACTTGTTCGGAGATAGTTCGATTCTCCTCCGAAAGAGCTGGGGAGATTGGTAGAATACCGAACGAATGGGCTCGGTGTCTTTTGCCTCTTGTGCGGGATCGTAAGGTTAGAATTGAGGGGCAGTGTAAATTCGCACCTAATGTTTTGGGCATCATGGACTCCATTATTTTGTCGGTGAGTGTATTTATCAACAGTTCGCTGTTTGGCAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACGGATGAGTCAGTGTTTCATCCGCTTCCAACTTTGTTTCGGTTGCTTGGCCTAAACCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTCTCAGCCAAAGGGTCCCATCACTACGTGCCAAGTCTGAGTATCCTTCTCAAAATGGTCACGAGAATGACAATGAAGATTCCATTTCAGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCTAGTAATCTTCTGTGTGAACTGAGGCCCTATCAAAAGCAAGCGCTTTATTGGATGATACACATGGAGAAGGGACAAGCTATGGATGAGACAACAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCCTTGCCCATTCAGGAAAGGGTGGACAAATAGGAAGTCAACCCATAACCCAGACCTTTATTGAAAGCAGTGATGTTAGTGATACAGTGCACAATTTTTCAAGCATACCCAAGAAGGCAAACAAGTTTGCTGGTTTTGATAAACTGGGGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCTATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGCACACCCCGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTGCTCAAAGTGATGTTGTAATTACTACATATGGAATCTTGGCCTCTGAATTTTCTAGTGAGAATGCAGAGGATAATGGTGGGCTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTATGGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCTATCCAGAACAGCCTTGAGGATATTTATAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGCGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTAAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGAAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAAGCCCTATTCAAAAGATCTAAGGTAAAGTTCGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACCCAAGAATTTGCCGATCTGAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTATAATGCTTCAGAAGGTGAAATAAAAGACGGACCTTCACGGGCTTATGTTCAGGAAGTTGTTGAAGAGCTACGCAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGAAATGCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAACGATTGGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGATAGAGTCGTGCAAGGTGACTGTTCTTTTGAATGAACTTGAAAATCTCCGCTCATCTGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTCGACCTCTTGCAGATTCCCTTCACTAGGAGTAACATTTCATTTGTTCGTCTTGATGGGACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCAGAAGACAGCAACACCCTGGTCTTGTTAATGTCATTAAAAGCTGGTGGAGTGGGTATAAACCTACCAGCCGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTTGAGGAACAAGCTGTCATGCGTATACATCGCATTGGACAAACAAAGAAGGTGGCTATTAAAAGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCTCGGATTGAGGAGTTAAAGATGCTTTTTACTTAG 3003 0.4549 MGSKDSDHHLSTVRSIVGSEFTDMEIIRALHMAKNDVTAAINIIFDTLTPSKFKPTRPSNPQPVSPPTPSSPAVTVAANSNHSDGEGRSVNNRDDWWFVGCGEMTGLSTCKGRTLNCGETVVFKFPTKTLSASPKGFGRAATCSEIVRFSSERAGEIGRIPNEWARCLLPLVRDRKVRIEGQCKFAPNVLGIMDSIILSVSVFINSSLFGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSQRVPSLRAKSEYPSQNGHENDNEDSISEIDVENIVGVGSNSELEEMDPPSNLLCELRPYQKQALYWMIHMEKGQAMDETTTTLHPCWEAYHLADKRELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGKGGQIGSQPITQTFIESSDVSDTVHNFSSIPKKANKFAGFDKLGKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNASEGEIKDGPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNATSGLCPVCRKTIGRQDLITAPTENRFQVDIEKNWIESCKVTVLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRSNISFVRLDGTLNLQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLPAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00583 1000 Pfam HIRAN domain 100 200 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca10g00583 1000 PANTHER DNA REPAIR PROTEIN RAD5 103 1000 - -
Cca10g00583 1000 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 835 1000 IPR001650 -
Cca10g00583 1000 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 376 593 IPR014001 -
Cca10g00583 1000 Gene3D - 647 1000 IPR027417 -
Cca10g00583 1000 CDD RING-HC 765 804 - -
Cca10g00583 1000 MobiDBLite consensus disorder prediction 51 89 - -
Cca10g00583 1000 MobiDBLite consensus disorder prediction 56 70 - -
Cca10g00583 1000 SMART ring_2 765 804 IPR001841 -
Cca10g00583 1000 MobiDBLite consensus disorder prediction 256 275 - -
Cca10g00583 1000 SMART helicmild6 864 947 IPR001650 -
Cca10g00583 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 829 IPR013083 -
Cca10g00583 1000 SMART HIRAN_2 99 204 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca10g00583 1000 MobiDBLite consensus disorder prediction 71 86 - -
Cca10g00583 1000 SMART ultradead3 314 615 IPR014001 -
Cca10g00583 1000 CDD SF2_C_SNF 831 958 - -
Cca10g00583 1000 SUPERFAMILY RING/U-box 753 811 - -
Cca10g00583 1000 CDD DEXDc_SHPRH-like 318 631 - -
Cca10g00583 1000 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1000 - -
Cca10g00583 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 631 IPR027417 -
Cca10g00583 1000 MobiDBLite consensus disorder prediction 255 291 - -
Cca10g00583 1000 ProSitePatterns Zinc finger RING-type signature. 780 789 IPR017907 -
Cca10g00583 1000 Pfam Helicase conserved C-terminal domain 835 947 IPR001650 -
Cca10g00583 1000 Gene3D - 376 643 IPR038718 -
Cca10g00583 1000 ProSiteProfiles Zinc finger RING-type profile. 765 805 IPR001841 -
Cca10g00583 1000 Pfam Zinc finger, C3HC4 type (RING finger) 762 808 - -
Cca10g00583 1000 Pfam SNF2-related domain 321 709 IPR000330 GO:0005524|GO:0140658
Cca10g00583 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 989 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00583 Cca-Chr10 6369368 6378790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00583 1 1000 RAD5 or RAD16-like Gene Family AT5G22750 70.673 0.0 1483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca10g00583 SNF2_N 4.6e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00583 K15505 - gmx:100794452 1811.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00583 10 6369368 6378790 Cca10g00583 10 6369368 6378790 ECH