Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00582 ATGGAGCCTCCCGTCGCAAGATCCAGAGGTCGCCCGCGGAAACGGAGAAGAGAAGAGGACGAAACCGTCGCCGCCGATCCGAAATCGCTCCTCGAAGCGAAGAAGACGCTACCGATAGCATTGGTTGGACGATACGTTTTGAAAGAGTTCCGCAGAAACACTGTTCTTCTCGGTAAAGTCGTGCGTTACGAGCGCGGATTGTACAGAGTCGTGTACGAGAGTGGCGGTTGCGAGGATTTAGGTAGCACCGAGATTCGTAGGATACTTCTCCTTGACAGTTATTTCGACGATGATTTGACTCGGAGGAAGGTTGAATTAGATGAATCAGTGTTGCCGAAGATCGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCGCGGTGATTTATTGGTTGAGAACGAAGAGGAACGAGACGAAAAGGACGGTGATGACTCGTCCGGCGAGGCTAGGGATTCGAGTTCCGATGCGGAAACGTTGATACCGTCGCCGCCGCAGCTGCCGCGGTCTTCCGGAACAATTGGAGTGCCGGAACCGTTCGTTTTGAATCTCTTTTCAGTTTACGGATTTCTGCGATCATTCAGCATTCGCCTGTTTCTGAGTCCGTTTACTTTGGACGAGTTTGTCGGTTCTCTTAACTGTAAAGTTTCGAACACGTTGCTTGATGCAATTCACGTGTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCAGCAGATGGCTCGCCGCGTGCATCAAAATGCCTCAGGTGCAGTGATTGGAGCTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTATTTCAGTATTTAGCAATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAAATTTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAGTTGATGATATTGCAAATTCTTTGTGATGATGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCAAATCCTTCCTGCTGAAAATGGGCCAAAAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACAAAGAAGTATGTTTCAGAATTGAATTCTAAGAATCTTCCCAGTAACTCTATTACACATTTCAGAGATACTGAAACTACCGATGAAGGTGATGTTGATGGAAATGGAGATGAATGTCGCCTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGATGTATTGGTGTGATGAAGATGTATATACCAGAAGGGGCATGGTATTGTCCGGAGTGCAAAATAAATATGATCGGGCCTATAGTTGCGCGGGGTACAGCACTTAAAGGAGCTGAAGTATTTGGAAAAGATTTGTATGGACAAGTTTTCATGGGTACTTGCAACCACTTATTGGTGCTCAATGTCAACAGTGATGAATTTTGTCTTAAATACTACAATCAGAATGACATTCCTGAAGTTCTACAAGTGCTTCTTGCATCATTGCAACACAGACCAATATATAATGATCTTTGCATGGCAGTGTTACAATATTGGAATATTCCTGAAAGCTTCTTACCCCTTTGTGTCACAACCGGACCACACGTAAACTCAACAAATACAAAGACAGATATGAACATCTCTACTGCATTTCTCCATCCTATGGTCGAAGAAGACCATAAAGCTGTTAGTTTAGTGAAGCCAGAACACAGTTTAACCCTTGCAAATGGGATTTGTAGTGATAATACGGTGACATCATTGGTTACCAGTCAAAGTTCTGTTCCTGGAAGCAGTGGCATTTCAAGAACTAAGGACTCCTCTACTGTGAATTTGAAGCTTCATGACGAAACTACAATGGATTCAGTTGTTTCGACTGTTAACCATCAATCTGACCCAAAGTACCAAAATTCTGTTGATATGTCAGCTGCAGTAGGTCCTTCCAGGTGCTCCATGGTAAGCAGCCAATTTAATAATGATGGGCACATAAATGGCACAGGACTGCCTACGAAATTGTCGTCGCAAACTAGAGGTGACCAAGCTGCTTTTGGGAAGTGCAAAGGCAGTTTAACCAATGATTTTGTGTACATGGGTTGTTCCTATAAACCACAGTCATACACTAATTACTATATGCATGGTGATTTTGCTGCATCCGCTGCTGCTAACTTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGACAACTTGGGGAAAGCAACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCACTAACGGCTTCACGCTTCTTTTGGCCAAGTTCCGAAAAGAAGCTTGTGGAGGTACCAAGAGAGAGGTGTGGCTGGTGCATTTCTTGTAAAGCCTTTGTTTCTAGCAAGAAAGGATGCATGCTAAATCATGCTGCTCTAAGCGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTCAGGAGTGGAGAAGGAATCATCCCTAGCATTGCAACATATATTATATATATGGAGGAAAGTTTACGTGGATTAATAGTTGGGCCCTTTCTAAGTGAATACTGTAGAAAGCAATGGCGTAAACAAGTGGAACGAGCCACATCATTTGGTGATTTAAAGCCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCCTTATGTGGGGAGTGGGTGAAGTTGGTGGATGATTGGTTGGCTGAATTTTCTACTATGCAAACTACTGCATGTACTCTTGGAACAACACAGAAACGTGCAACATGCGGGAGGCATAAGAAACAGTTATCTATAAATAAAGTTACAGCCGTTGGTTGTCATGAAAATTTTACATGGTGGCATGGTGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGCAGCCCGCCAAGGTGGTTCCAGGAAAATTTTGGGTGTATTCTATGCTGATGGCTCTGAGATTCCCAAACGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTTCGGTATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCAGGATGGGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAAAATTGTAGAGGGCAAAATTTTTTACAGAGTAGCCTTTGGGAGTCAAAAGCATCTTCCTTCTCGGGTAATGAAAAATGTTGAAATAGAGCAAGGTCCTGAAGGAAAGGAAAAATATTGGTTTTCCGAAATGCGCATTCCTTTGTATTTGGTAAAAGAGTATGAAGTACGCAATGGAAAAGTGCTCCCTGATAAAGAGTACCTGCATACATTTCAGTTGCACAAAAGGCGTTATAAAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAAATTGGACATGTTATCTTGCTCTGCATGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTAGTAACCCTTGA 3522 0.4287 MEPPVARSRGRPRKRRREEDETVAADPKSLLEAKKTLPIALVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGCEDLGSTEIRRILLLDSYFDDDLTRRKVELDESVLPKIAEEPEKGSSELRGDLLVENEEERDEKDGDDSSGEARDSSSDAETLIPSPPQLPRSSGTIGVPEPFVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGSLNCKVSNTLLDAIHVSLMRVLRRHLENISADGSPRASKCLRCSDWSLLDALTWPVFVFQYLAIYGYTKGPEWKGFYDEIFYGEYYLLPASRKLMILQILCDDVLASEELKAEMNMQILPAENGPKRVHPRYSKTTACKDSETKKYVSELNSKNLPSNSITHFRDTETTDEGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGAWYCPECKINMIGPIVARGTALKGAEVFGKDLYGQVFMGTCNHLLVLNVNSDEFCLKYYNQNDIPEVLQVLLASLQHRPIYNDLCMAVLQYWNIPESFLPLCVTTGPHVNSTNTKTDMNISTAFLHPMVEEDHKAVSLVKPEHSLTLANGICSDNTVTSLVTSQSSVPGSSGISRTKDSSTVNLKLHDETTMDSVVSTVNHQSDPKYQNSVDMSAAVGPSRCSMVSSQFNNDGHINGTGLPTKLSSQTRGDQAAFGKCKGSLTNDFVYMGCSYKPQSYTNYYMHGDFAASAAANLAVLSSEDSRSEGHVSDNLGKATSGNTYLLAKAFSLTASRFFWPSSEKKLVEVPRERCGWCISCKAFVSSKKGCMLNHAALSATKNAMKILSGLAPVRSGEGIIPSIATYIIYMEESLRGLIVGPFLSEYCRKQWRKQVERATSFGDLKPLLLKLEENIRTIALCGEWVKLVDDWLAEFSTMQTTACTLGTTQKRATCGRHKKQLSINKVTAVGCHENFTWWHGGKFTKSVFQKAVLPKSMVRKAARQGGSRKILGVFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLQDGKGQDTEASAFRNANIRDKKIVEGKIFYRVAFGSQKHLPSRVMKNVEIEQGPEGKEKYWFSEMRIPLYLVKEYEVRNGKVLPDKEYLHTFQLHKRRYKATYKDIFFYLTCKRDKLDMLSCSACQLGVLIGNALKCSACQGSNP 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00582 1173 ProSiteProfiles Zinc finger PHD-type profile. 387 434 IPR019787 -
Cca10g00582 1173 SUPERFAMILY FYVE/PHD zinc finger 369 433 IPR011011 -
Cca10g00582 1173 MobiDBLite consensus disorder prediction 1 25 - -
Cca10g00582 1173 MobiDBLite consensus disorder prediction 115 133 - -
Cca10g00582 1173 ProSitePatterns Zinc finger PHD-type signature. 390 431 IPR019786 -
Cca10g00582 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 436 IPR013083 -
Cca10g00582 1173 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 292 324 IPR028942 -
Cca10g00582 1173 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1170 - -
Cca10g00582 1173 ProSiteProfiles DDT domain profile. 177 237 IPR018501 -
Cca10g00582 1173 CDD PHD2_CHD_II 390 431 - -
Cca10g00582 1173 MobiDBLite consensus disorder prediction 152 169 - -
Cca10g00582 1173 Pfam PHD-finger 390 432 IPR019787 -
Cca10g00582 1173 Pfam DDT domain 181 234 IPR018501 -
Cca10g00582 1173 SMART PHD_3 389 432 IPR001965 -
Cca10g00582 1173 MobiDBLite consensus disorder prediction 115 171 - -
Cca10g00582 1173 SMART testlast3 177 237 IPR018501 -
Cca10g00582 1173 PANTHER PHD FINGER FAMILY PROTEIN 1 1170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00582 Cca-Chr10 6336122 6344521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00582 267 519 EF-hand Containing Proteins AT5G22760 47.426 2.01e-70 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca10g00582 DDT 6.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00582 - - gmx:100808614 1889.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00582 10 6336122 6344521 Cca10g00582 10 6336122 6344521 ECH
Cca10g00582 10 6336122 6344521 Cca04g00872 04 9097196 9103762 PCT