Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00575 ATGGAGGAGGACCGCAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGCGGAGGGTACCATGCGGTTAAGATTGGTGACACTTTCAAGAATGGGTGTTATGTTGTGCAAAGCAAACTTGGTTGGGGTCATTTTTCCACCGTTTGGCTCGCTTGGGACACTCACAAATCGAGATATGTTGCCTTAAAAATTCAGAAGAGTGCTTCACATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAGAAATGTGTAGTAAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGGGATAATCTCCTCACCCTTATCAAGTATAGTGATTATCGAGGGGTTCCTCTTCCCATGGTGAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTAAAGTAATACACACAGATTTGAAACCTGAGAATGTTTTACTTCTGTCTCCAATAGATCCATTGAAGGACCCTAGAAAATCAGGCGTTCCACTTATTCTTCCAAATACAAGGGATAAGATTGTGACCAAGAATGGGACAATGATGGCCAATAAAAGTTTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCAGCTCAAGGCTGTGTTGGGAAGGAAGATGGTGAGGAAGCTGAGGAAGATTCCAAAGAACCTAATGAGCAAGATGATTGTAGCAATGATGTGAAACCAAGTTTAGAATCTGGTGATGTTAAACCAAATAGTTCTGTGAGTAAAGATGAATCAACAAAGACCTCTGAAAATAAGGATATTCCTGAAGGAAGTCATGGTCATAGGAGGGGTAGCCGCTCTAGAAGAAAGGAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCCTGTTGGACTTATAAGCAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTCTCCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCATGCATTTGCTTTGAGCTTGCTGCTGGCGATGTTCTTTTCGATCCTCATAGTGGTGATAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTATTTCAACAGATATGGTGATTTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGAATTCAGTGAACAAGATGCAAATAGCATTGCTGACTTCCTTCTTCCGTTACTTGATTTTGTCCCTGAAAAGAGGCCAACGGCTGCACAATGCCTTCAGCATCCATGGTTCCATGCAGGTCCCCGGACTCTCGAGCCATCATTGACTACTGTGCAGCATGATGTTATTGATGGCAGCGTGATATCTGAAAATAAGCAAAGGGAAAATTCTGAGGAGGAGGCTGTGGAAGTTGGTATGGGAAATATGGTCATAGATGGAAATCCAAAGCCACTCTAG 1611 0.4295 MEEDRSEVSDYSSEDEGTEDYRRGGYHAVKIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTHKSRYVALKIQKSASHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELKVIHTDLKPENVLLLSPIDPLKDPRKSGVPLILPNTRDKIVTKNGTMMANKSLNGDLTKNQKKKLRKKAKKAAQGCVGKEDGEEAEEDSKEPNEQDDCSNDVKPSLESGDVKPNSSVSKDESTKTSENKDIPEGSHGHRRGSRSRRKELLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELAAGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDYFNRYGDLRHIRRLRFWPLNKVMMEKYEFSEQDANSIADFLLPLLDFVPEKRPTAAQCLQHPWFHAGPRTLEPSLTTVQHDVIDGSVISENKQRENSEEEAVEVGMGNMVIDGNPKPL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00575 536 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00575 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Cca10g00575 536 CDD STKc_SRPK 29 482 - -
Cca10g00575 536 Pfam Protein kinase domain 318 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00575 536 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00575 536 MobiDBLite consensus disorder prediction 208 310 - -
Cca10g00575 536 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 535 - -
Cca10g00575 536 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Cca10g00575 536 SUPERFAMILY Protein kinase-like (PK-like) 35 494 IPR011009 -
Cca10g00575 536 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Cca10g00575 536 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Cca10g00575 536 PANTHER SERINE KINASE-LIKE PROTEIN 8 535 - -
Cca10g00575 536 MobiDBLite consensus disorder prediction 287 303 - -
Cca10g00575 536 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00575 Cca-Chr10 6274100 6278937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00575 6 534 EF-hand Containing Proteins AT5G22840 65.595 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Cca10g00575 Pkinase 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00575 K08832 - gmx:100791829 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00575 10 6274100 6278937 Cca10g00575 10 6274100 6278937 ECH
Cca10g00575 10 6274100 6278937 Cca04g00864 04 9036890 9041272 PCT