Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00566 ATGGCCAAAGGCACCGATTCCGACGAGTTCGTCTTGCTCTCTAGGGTTCGCTCCGGCCTCAAGCGTGAGTTCGCCTTCGCCATGAAGGCCCAGTCCGAGATCTGCGCCGCCTCCTTGGGCCGGACGCGGGCCAGCAAGAACCGTCCCGACCCGCCGCTCCAGCCCGCCTCGGCCCGCAAGCGCTCCAGGAAGGCCGAGGAGCCCAAACCCCACGAGGACGCTGCCATGAGCGAGGAAGAGGCCAAGAGCGATGTCGTTGATCTTCAGAGCGACGATGAACCCAAGATTCACGCCGGAGAGTCTACGCCAATGCCGGTTTGCGAAGAGAATTGTAATCCTAAAAGCGACGTCGTTTTGGAAACTGAGGAGCCCAAGAATGACGTCGTTTTGGAAACTGTTATCAATGAGGAAGAGCCTGTGGTGAAGGAAGAGATTGTGGATGAGATGGCAgaagcagaagcagaacctgaacctgcacctgaacctgTTTGTGGAATTAAAGAGGAATTGGAGAAGGAGAAGGATATTGGTGAGACAACAACCCTAGTTTTGGTTAAAGATGATGTTAAGGGCAAGAAGAAGAAGCGGTTGGAGAAGCCGGAACCGGTGAGAAGGTTTACTCGTTCGTTGTTGAAGGTGAAATCTGAGGAAGGGAATGATGAGGGACATGTTGGTGTGATTGAAATTGATGATGATGTTAAGAGGGAAAGTGAAAGCGAGGCTTCGTTGGTGATGACGGGTCCTTCAACATGGACAAAGAATTCGAGTTATAGGTTGAGGAAGTTTCCTACCAAGTTGAAGGATCTTCTTGCTACGGGGATTCTTGAGGGATTGCCAGTGAGGTACAAGAAGGGGACGAAGGCACGGAAGCCTGGAGAATCAGCGCTTCAAGGAGTGATTCGTGACTCTGGGGTTTTGTGCTTTTGTGATATTTGTAAGGGGGTTGAGGTTGTCACGCCCACTGTGTTTGAGCTGCATGCTAGGAGTGCAAACAAGCGTCCCCCGGAGTACATTTACATTGATAATGGAAATGGTGGAGTTACCCTTCGTGATGTCATGAATGCCTGCTGCTGTTCTTCATTGAAGTCCCTGGAGGAAGTCCTCCAAAAGTTCCTTGGTGACTTCACTTTGAAGAAATCTTCCGTCTGTTTTAACTGCAGAGGTGCATGCAAAGGTGTGGCAAGACTAGTATGTGATTCATGCGTAGGGTTGATCGACTCTCAACAAAACCCCCCTCAAATAGCTGCTGCTAGCATCAAAAGAGTTTCACAGCCAGTTCAACCCAGATCTCCAGAACCAGTTCCATGTTCCTTAAATCTCAGTTCACCAGAACCAGTTGGGGTTCAAAAATCATCAGACAATGGGATGCAGCCAAATTCATTAGACAATGGGATGCAGCCAAGTTCATTAGTCATCGGGATGCAGCCTAGTTCATTAGACAACGGGATGCAGCCTAGTTCATTAGATAACGGGATGCAGCCCAATTCATTAGATAACGGGATGCAGCCTTATTCATTAGATAACGGGATGCAGCCAAATTCACCAAACAATGGGAAGCACCGAAATTCATCAAACAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGGTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCGGATGGAACTGAAGTAGCCTATTATGCTCATGGAAAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCAGTGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAACCTTACCTGCACATATACACATCTAATGGAATCTCGCTCCATGAGCTGTCCATCTCTTTATCAAAAGATCGGAGGTTTTCCAACAATGATAATGATGATCTCTGCAGCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGGTGTCCAAGAGCTTTTCACATAGATTGTGTCCCTCTACCTTGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGATAGGCATGGGCAGCATAATTTGAATGCTTTGGCAGCTGGAAGGATTGCAGGCACTGATATTTTAGAACAGATGAACCCAAGATGTATTCGTGTTGTCAAAACTGTAGAAGTTGATCATGGTGGATGTGCCTTGTGCAGTCGTCCCAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGCTTGAAGGAACATAACATGCAGAATCTAGAGGAATTGCCGGAAGGGAATTGGTTTTGTAGTACAAATTGCAATCAAATCCATTCTGCTTTGGGGGATTTGGTGGCTTGTGGGGAGAAGAATATTCCAGATTCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAGAAAAGTCTTGAGATTGGAGATGGTCTTGATGTTAAATGGAGGGTTATCAACTGGAAGTTAGATAATTCGGTTGAAATTAGGAAATTGCTTTCAAAAGCTGTTTCGATTTTCCATGAGAGGTTTGATCCAATAGTTGATTCTACATCTGGCCGTGATTTCATCCCCACAATGTTGTTTGGAAGGAACATTCGTGGTCAAGATTTTGGTGGAATATACTGTGCAGTGCTTTCTGTCAACGGTGATGTTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATAGCTGAGCTTCCATTAGTGGCTACAACTACTGATTCACAAGGACAGGGCTATTTTCAATGCCTGTTTTCTTGCATTGAGACGCTACTTGGATCCTTAAATGTGAAAAACCTGGTCCTACCGGCTGCTGATGAAGCTGAATCAATATGGACCGGTAAATTTGGATTTTCAAAACTAGAGCTGGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCGGTGTTACAGAAGCCTGTTCCTGCACTCTGA 3003 0.4499 MAKGTDSDEFVLLSRVRSGLKREFAFAMKAQSEICAASLGRTRASKNRPDPPLQPASARKRSRKAEEPKPHEDAAMSEEEAKSDVVDLQSDDEPKIHAGESTPMPVCEENCNPKSDVVLETEEPKNDVVLETVINEEEPVVKEEIVDEMAEAEAEPEPAPEPVCGIKEELEKEKDIGETTTLVLVKDDVKGKKKKRLEKPEPVRRFTRSLLKVKSEEGNDEGHVGVIEIDDDVKRESESEASLVMTGPSTWTKNSSYRLRKFPTKLKDLLATGILEGLPVRYKKGTKARKPGESALQGVIRDSGVLCFCDICKGVEVVTPTVFELHARSANKRPPEYIYIDNGNGGVTLRDVMNACCCSSLKSLEEVLQKFLGDFTLKKSSVCFNCRGACKGVARLVCDSCVGLIDSQQNPPQIAAASIKRVSQPVQPRSPEPVPCSLNLSSPEPVGVQKSSDNGMQPNSLDNGMQPSSLVIGMQPSSLDNGMQPSSLDNGMQPNSLDNGMQPYSLDNGMQPNSPNNGKHRNSSNNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGKKLLVGYKKGYGIFCTCCNSEVSASVFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRHGQHNLNALAAGRIAGTDILEQMNPRCIRVVKTVEVDHGGCALCSRPNFSKSFGPRTVIICDQCEKEYHVGCLKEHNMQNLEELPEGNWFCSTNCNQIHSALGDLVACGEKNIPDSLLSLIKKKHEEKSLEIGDGLDVKWRVINWKLDNSVEIRKLLSKAVSIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFGGIYCAVLSVNGDVVCAGVFRVFGSEIAELPLVATTTDSQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFSKLELDEINKYKKFYRMMIFQGTSVLQKPVPAL 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00566 1000 ProSiteProfiles Zinc finger PHD-type profile. 640 685 IPR019787 -
Cca10g00566 1000 MobiDBLite consensus disorder prediction 39 111 - -
Cca10g00566 1000 CDD PHD1_AIRE 642 682 - -
Cca10g00566 1000 MobiDBLite consensus disorder prediction 57 98 - -
Cca10g00566 1000 ProSitePatterns Zinc finger PHD-type signature. 643 682 IPR019786 -
Cca10g00566 1000 Gene3D - 827 995 - -
Cca10g00566 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 713 IPR013083 -
Cca10g00566 1000 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 886 971 IPR016181 -
Cca10g00566 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 788 IPR013083 -
Cca10g00566 1000 MobiDBLite consensus disorder prediction 434 535 - -
Cca10g00566 1000 SUPERFAMILY FYVE/PHD zinc finger 723 784 IPR011011 -
Cca10g00566 1000 PANTHER AUTOIMMUNE REGULATOR 1 996 - -
Cca10g00566 1000 SMART PHD_3 642 683 IPR001965 -
Cca10g00566 1000 SMART PHD_3 730 785 IPR001965 -
Cca10g00566 1000 Pfam PHD-finger 643 684 IPR019787 -
Cca10g00566 1000 PANTHER AUTOIMMUNE REGULATOR 1 996 - -
Cca10g00566 1000 MobiDBLite consensus disorder prediction 419 543 - -
Cca10g00566 1000 Pfam Tify domain binding domain 298 356 IPR032308 -
Cca10g00566 1000 Pfam Tify domain binding domain 576 624 IPR032308 -
Cca10g00566 1000 SUPERFAMILY FYVE/PHD zinc finger 630 684 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00566 Cca-Chr10 6139819 6147988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00566 254 997 PHD Transcription Factor Family AT2G36720 44.400 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca10g00566 TDBD 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00566 - - gmx:100803825 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00566 10 6139819 6147988 Cca10g00566 10 6139819 6147988 ECH
Cca10g00566 10 6139819 6147988 Cca04g00854 04 8900233 8907997 PCT