Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00563 ATGATTTCAAGGGCCACATCTAGCTTCAAAAGTGTCCATGAAGGGCTTCAGATGTTCCCTGAACCACCCCAAGATTTGGTGTTACCCTCTCTGGAAACAAACTCTAGctcagcctcagcctcggcctcaacctcagcctcagGTTCGCAATCTAGTTCCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAACTCAGTGAGGTTCAGACCCTGGTAAGTGTTATTCTCTCCCCAAATCAATGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCACGAAATCATAGTCACTGCCACATCAATGATGTTCACCTGCCAACACATGGCTCTCACCACCCTTCCAGGTACTAATAGTAATACTACTACATGCACAAACAAATTGCACCACCAGAACAAGTTATTGCCTCACTCAAATAATTTTGGCACAAATACAAGTGTCCTTGGTAATAACACAGACACAAATATTATTGACCCTAATCAGGGTTTGTTTTCTAGTACTGAGTCAGATGCACTAGACTGGTTTACTGAAAGCTATGACAACAACCATGATAATAGCAATATTAGTAGGATTAAGGAGGATGATCCTAGCGTTTCAATTAGTGAAAACAATAGAGGGCTTTCAGCAAATAATAGCGACATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACACACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCAAATTTGAGGATGCACATGAGGGCTCATGGGGACGAGTACAAGACCAATGCTGCATTGAGTAACCCAATGAAGAGTTTGGAAGGTGGAAAAGATCAGTGTTTGATGAGTGTGAAAGCAAAGAGATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTTCAGCCACTGAAGTCCATGATTTGTGCCAAGAACCATTACAAGAGGAGCCATTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTTTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCACGTGTGGCACCTCGTTTTCTAGGAAAGATAAGCTTATGGGGCATGTTGCTTTGTTCGTGGGGCACCAACCTGCTATCATCAACAATGGTTTGTCATATTCTGCCAAATTAATTGGAGCACCACGTACACATTGA 1203 0.4256 MISRATSSFKSVHEGLQMFPEPPQDLVLPSLETNSSSASASASTSASGSQSSSLLFNLSILKDKLSEVQTLVSVILSPNQCLPESTSMAISSMNSTIHEIIVTATSMMFTCQHMALTTLPGTNSNTTTCTNKLHHQNKLLPHSNNFGTNTSVLGNNTDTNIIDPNQGLFSSTESDALDWFTESYDNNHDNSNISRIKEDDPSVSISENNRGLSANNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPMKSLEGGKDQCLMSVKAKRYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCTCGTSFSRKDKLMGHVALFVGHQPAIINNGLSYSAKLIGAPRTH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00563 400 Pfam C2H2-type zinc finger 233 255 - -
Cca10g00563 400 MobiDBLite consensus disorder prediction 28 50 - -
Cca10g00563 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Cca10g00563 400 Gene3D Classic Zinc Finger 324 374 - -
Cca10g00563 400 SMART c2h2final6 288 321 IPR013087 -
Cca10g00563 400 SMART c2h2final6 326 348 IPR013087 -
Cca10g00563 400 SMART c2h2final6 233 255 IPR013087 -
Cca10g00563 400 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 385 IPR044300 GO:0010044|GO:0010447
Cca10g00563 400 Gene3D Classic Zinc Finger 226 291 - -
Cca10g00563 400 MobiDBLite consensus disorder prediction 23 50 - -
Cca10g00563 400 PANTHER OS08G0562300 PROTEIN 33 385 - -
Cca10g00563 400 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Cca10g00563 400 SUPERFAMILY beta-beta-alpha zinc fingers 231 258 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00563 Cca-Chr10 6119681 6120883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00563 51 381 C2H2 Transcription Factor Family AT5G22890 49.408 1.42e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00563 zf-C2H2_6 0.00042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00563 - - gmx:100802769 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00563 10 6119681 6120883 Cca10g00563 10 6119681 6120883 ECH