Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00562 ATGAACACAGAAGCCATGGAGGAACATGTCTCAAGTAACAACGATTCAGCAAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGCCTTGTCGCCACTACGACCACCGTCACCACTACTGCTGTCGCCATGATGTCTAGTTGTTCAAGCGCTTCCGGTGACGGCGGTGCATCGCTTTCATCCACCACCTTCGAGGACGACGAGGAAGACATGGCTAACTGTTTGATTCTCCTAGCGCAGGGAAAAGGAGGGGATTCTCGTGGTAAGACCCTACCAGATGATGTGAAGAAGACAGAGAAGGGTAGCACCAAAAGTATTGATTTTTATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTAGGAGGCCACAGGGCGAGTCACAAGAAGCCTAAAATCATAGCTCAAGAAGACAAGAAGtcctcatcatcatcgttatcaccaccaccaccaccatcgtcatcGCAAGTTTTTAGCTTTGAAGAAGCAAAACAAGGTCACATGAAGGCTATTAGCCCTCCTTCTGTTTCCCTTCAATTAGGGTGTGGCAACAACAAGGGTGGCTCCAATTTCCATGGAAACAAGTCCAAGATTCATGAGTGTTCCATTTGTGGGGCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGGGCATCTAACAATAATAATACTGTTCACAAAACAACTTCTGATGATGCCGTTCAAGTTAAGCCTCGGAATCTTCTAGAATTGGATCTCAACCTTCCGGCGCCGGAGGAAGATCTCCGGGACTCCAAGTTTCAGTTTCCGGCGAATCAGAATTCTATTATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 897 0.4526 MNTEAMEEHVSSNNDSANIAKGKRTKRRLRPLSPCLVATTTTVTTTAVAMMSSCSSASGDGGASLSSTTFEDDEEDMANCLILLAQGKGGDSRGKTLPDDVKKTEKGSTKSIDFYVYECKTCNRTFPSFQALGGHRASHKKPKIIAQEDKKSSSSSLSPPPPPSSSQVFSFEEAKQGHMKAISPPSVSLQLGCGNNKGGSNFHGNKSKIHECSICGAEFTSGQALGGHMRRHRASNNNNTVHKTTSDDAVQVKPRNLLELDLNLPAPEEDLRDSKFQFPANQNSIMLSAAPALVGCHY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00562 298 SMART c2h2final6 210 232 IPR013087 -
Cca10g00562 298 SMART c2h2final6 117 139 IPR013087 -
Cca10g00562 298 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Cca10g00562 298 Gene3D Classic Zinc Finger 114 232 - -
Cca10g00562 298 MobiDBLite consensus disorder prediction 132 168 - -
Cca10g00562 298 PANTHER ZINC FINGER PROTEIN ZAT5 5 298 - -
Cca10g00562 298 Pfam C2H2-type zinc finger 210 234 - -
Cca10g00562 298 Pfam C2H2-type zinc finger 116 142 - -
Cca10g00562 298 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 5 298 - -
Cca10g00562 298 MobiDBLite consensus disorder prediction 1 24 - -
Cca10g00562 298 MobiDBLite consensus disorder prediction 1 19 - -
Cca10g00562 298 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Cca10g00562 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Cca10g00562 298 SUPERFAMILY beta-beta-alpha zinc fingers 116 232 IPR036236 -
Cca10g00562 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00562 Cca-Chr10 6108652 6109548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00562 14 298 C2H2 Transcription Factor Family AT2G28200 42.532 1.55e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00562 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00562 - - gmx:100788646 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00562 10 6108652 6109548 Cca10g00562 10 6108652 6109548 ECH
Cca10g00562 10 6108652 6109548 Cca02g01901 02 38354083 38355761 ECH
Cca02g00460 02 9756771 9757766 Cca10g00562 10 6108652 6109548 ECH
Cca03g02415 03 45233182 45234310 Cca10g00562 10 6108652 6109548 ECH