Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00559 ATGAACGCGATGGATGCGCACCAAAACACACTTACATACATCAATGATTTTGAGCTTTATGACTTCGTTCACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGGATGAAGATGCCAACTGTGACTTCGGTTCTGACCTTATCAATGATTGTTTTGTTAACAATCAGCTTCTTTCATGCCCTACAAACCCATTTGATCAGAACAATAATAATGCTGTGAGTGTCTATGATCCAAGCTCCACATTTAGCTCCTTCTCTTGCTTTGATGGGGAGGTCAAGGGGCATGGAGAAGAAGAACATGATGGAGAGCATTCTTCAGAGACAACCACGACAACGACAATGACAACTAAGAATGGTGATGCTAAACCGAAACTAAAAACTGATAGGTCCAAAACTCTCATTTCTGAGAGGAGAAGGAGGGGTCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAAGCTTCTATAATTGGAGATGCAGTGTCATACGTGCATGAGCTTCAAGCTCAAGCCAGGAAGTTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAATGTCTGAAAATTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGTAGCACGTAATAGTCATCCAATATGCAAGAAGATCATGCAGGTGGACATGTTTCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAACAAAGGAGAAGGGATGGCTGCATCGCTTTATAGGGCTCTTGAGTCTCTTGCAGGCTTTAATGTTCAGAATTCAAACTTGGCTACAGTTTGTGAGAGTTATCTACTCACATTTACATTGAATGTAAAAGGATCTGAACCAGAAATTAACTTGCCAAATTTGAAGCTTTGGGTAACTGGTGCTCTTCTGAACCAAGGCTTTGAATTCGTGACATCGTTTCCTGCTTGA 963 0.4071 MNAMDAHQNTLTYINDFELYDFVHNPNFDQFINLIRGEDEDANCDFGSDLINDCFVNNQLLSCPTNPFDQNNNNAVSVYDPSSTFSSFSCFDGEVKGHGEEEHDGEHSSETTTTTTMTTKNGDAKPKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHELQAQARKLKAEVAGLEASLLMSENYQGSINNPKNVQVARNSHPICKKIMQVDMFQVEERGYYAKIVCNKGEGMAASLYRALESLAGFNVQNSNLATVCESYLLTFTLNVKGSEPEINLPNLKLWVTGALLNQGFEFVTSFPA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00559 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Cca10g00559 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 316 - -
Cca10g00559 320 CDD bHLH_AtFIT_like 129 204 - -
Cca10g00559 320 Coils Coil 176 196 - -
Cca10g00559 320 MobiDBLite consensus disorder prediction 97 131 - -
Cca10g00559 320 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Cca10g00559 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 204 IPR036638 GO:0046983
Cca10g00559 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 316 - -
Cca10g00559 320 SMART finulus 136 185 IPR011598 GO:0046983
Cca10g00559 320 Gene3D - 122 196 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00559 Cca-Chr10 6076937 6078620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00559 4 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.086 2.47e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00559 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00559 - - gmx:100805451 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00559 10 6076937 6078620 Cca10g00559 10 6076937 6078620 ECH
Cca10g00559 10 6076937 6078620 Cca04g00847 04 8793631 8795701 PCT