Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00549 ATGGGAAGAGCCCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTTAAGGAGTACATCGAGAAGCATGGCACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTTAAGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGAGAATTCTCCGACGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCCATTATAGCAGCTCAGTTGCCAGGTAGGACTGACAATGATATCAAAAACTATTGGAACACCAAGCTTAAGAGGAAACTTATGGGGTTGCTTCCTGCATCTCATCAAAGATCAATAGCACCCTATCAAACCCCACCATCATCATTTCCTTCTCACTCATCACTATCATCCTCAGTCTACTGCAACAACAACTCTCATTATTACCTCCCAGCACCAACAGTATCTTTCTCATGCCTTGAACCAATATCTGCTCCTTCAAATAATTACACAAACACAATCTGCACAACATCCTCCACCTCTCTCCCTTTTTATCAAAACCAAGAGCCCTTGGTGAGTGTTAGTCCCATGCAGTATTACCACCCTACCACAGACACTTCTATGCTTGTGTTTGGAAGTGAAACAAGTTGCAGTTCCTCAGATGGGAGCTGCAGCCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGAAATGGGATTTCAGAGTTTCATGTTTGGAGATCAGCACATGAACAACAAATTCATGCTTAATCATGATCATGGTGGTGAAGAATATGTGAACCAATATTGGGGAGAGAAGCCCTATTTTCAAACGCAAACAGCATTGGATTATGATCTAGAGGTTATTAAGGACCTAATTAGAAGCAACGGTAGTAATAATAGTAATAATGGGTACTTGAGTATTGATGAAAACAAGACGGTGGAGAAAGGGTTGTACTACAACTACTGA 996 0.4227 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRSIAPYQTPPSSFPSHSSLSSSVYCNNNSHYYLPAPTVSFSCLEPISAPSNNYTNTICTTSSTSLPFYQNQEPLVSVSPMQYYHPTTDTSMLVFGSETSCSSSDGSCSQVSLGREIKQEEMGFQSFMFGDQHMNNKFMLNHDHGGEEYVNQYWGEKPYFQTQTALDYDLEVIKDLIRSNGSNNSNNGYLSIDENKTVEKGLYYNY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00549 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca10g00549 331 Gene3D - 70 131 - -
Cca10g00549 331 PANTHER TRANSCRIPTION FACTOR RAX3 1 312 - -
Cca10g00549 331 PANTHER OS09G0431300 PROTEIN 1 312 - -
Cca10g00549 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca10g00549 331 CDD SANT 16 62 IPR001005 -
Cca10g00549 331 Gene3D - 7 68 - -
Cca10g00549 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca10g00549 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca10g00549 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca10g00549 331 SMART sant 13 64 IPR001005 -
Cca10g00549 331 SMART sant 67 115 IPR001005 -
Cca10g00549 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca10g00549 331 CDD SANT 70 113 IPR001005 -
Cca10g00549 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00549 Cca-Chr10 5976042 5977928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00549 1 119 MYB Transcription Factor Family AT5G57620 89.076 1.76e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00549 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00549 K09422 - gmx:100796382 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00549 10 5976042 5977928 Cca10g00549 10 5976042 5977928 ECH
Cca10g00549 10 5976042 5977928 Cca04g00831 04 8534153 8536426 PCT