Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00548 ATGCAGAGATCAGGATATGGATCGGAGGGAATATTCAGGTCTCTAAGGCCTCCACTTGTTCTACCAAAGGACCCAAACCTCTCACTCCTTTCACACCTCTTCACCAGAGTCTCTGCCTTTCCCTCCAAACCCGCACTCATCGATTCTCACACCGACCAAACCCTCTCCTTCGCGCAACTAAGGTCGCTAACCGTTAAACTCTCCCACGCGCTCCTGCGCCTCGGCGTCACCAAAAACGACGTCGTCCTCTTCCTCGCGCCTAACGACATCCGCTACCTCGTCTCCTTCCTCGCCGTCACCGCACTCGGCGCTGTCGTCACCACCGTCAACCCCGCCTACACCACCGCGGAAGTCTCCAAGCAGGCCAAAGACTCCAATCCCAAACTCCTCGTCACCGTCCCCGAACAATGGGACAAGCTCAAACACCTCCACCTCCCCGCCGTCTTCCTCCGCTCCCACGCGCCGGCGCCGCCCGAGGCCGGCCACACCTTCGACGCGCTGCTCGAGCTCGCCGCGTCGGCGACCGAGTTTCCGAGTGTTAGTGTGGCTCAGAGCGACGCGGCGGCGCTGCTGTACTCTTCCGGGACCACCGGTGTCAGCAAGGGCGTGATTCTCACGCACGGGAACTTCGTGGCGTCGTCGTTGATGATTGGAATGGACGATGAATTGGCGGGGGAGATGCACAGCGTGTTCCTCTGCGTTTTGCCGATGTTTCATGTGTTTGGTTTGGTGGTGATTTCGTACGCGCAGCTTCAGAGGGGGAATGCGGTGGTGTCGCTGAAGAAGTTTGAGTTTGAGCTTGTTTTGAAGACGATTGAGAGGTTTAGGGTGACGCATTTGTGGGTTGTGCCTCCTATTGTCCTTGCTCTGGCCAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCGTTGAAGCATATTGGTTCCGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAACGTTTTCCTCGTGTCAGTGTTTGTCAGGGATATGGAATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATCCGAGGATGGGGATTCGGAATAGTGGCTCCGCCGGGCCGCTAGTTGCGAGAGTGGAAGCTCAAATAATCAGTGTGGATACGCTGAAGCCCCTGCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAACATAATGCAAGGTACACTTCTGATTGCACTGCACTGCACTGTTAAGTTTATTGTATTCTGTGATTGCTATGGTACAAGATGTATGCTGTCAGATCTGAGGGGAGAGGCTGAGGTAACCTTATTTAGAGCTTAG 1311 0.5484 MQRSGYGSEGIFRSLRPPLVLPKDPNLSLLSHLFTRVSAFPSKPALIDSHTDQTLSFAQLRSLTVKLSHALLRLGVTKNDVVLFLAPNDIRYLVSFLAVTALGAVVTTVNPAYTTAEVSKQAKDSNPKLLVTVPEQWDKLKHLHLPAVFLRSHAPAPPEAGHTFDALLELAASATEFPSVSVAQSDAAALLYSSGTTGVSKGVILTHGNFVASSLMIGMDDELAGEMHSVFLCVLPMFHVFGLVVISYAQLQRGNAVVSLKKFEFELVLKTIERFRVTHLWVVPPIVLALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRVSVCQGYGMTETCGIVSVENPRMGIRNSGSAGPLVARVEAQIISVDTLKPLPPGQLGEIWVRGPNIMQGTLLIALHCTVKFIVFCDCYGTRCMLSDLRGEAEVTLFRA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00548 436 Pfam AMP-binding enzyme 35 397 IPR000873 -
Cca10g00548 436 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Cca10g00548 436 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 397 - -
Cca10g00548 436 Gene3D - 10 399 IPR042099 -
Cca10g00548 436 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 397 - -
Cca10g00548 436 SUPERFAMILY Acetyl-CoA synthetase-like 21 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00548 Cca-Chr10 5956768 5960642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00548 1 399 Monolignol Biosynthesis Gene Families AT4G05160 62.624 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00548 K01904 - gmx:100797843 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00548 10 5956768 5960642 Cca10g00548 10 5956768 5960642 ECH
Cca10g00548 10 5956768 5960642 Cca04g00828 04 8497900 8504289 PCT