Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00546 ATGGTGTCCGACGCGAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCTGCAGCGGCCAAGAGAGGAGGCAAAGCGGCTGCGGCGGCTGCTTCGTCCAAAACGACGTCGTCGTCGGAGAAGGCAGCCGACAAGCTCGCCGACGGAATTGGGGACATTCAGATTTCTGATCGGACCTGCACTGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTCCATGGACATGATCTAATAGTTGATACTGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTGCCGAGAGTTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCACTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACTCTTGAACGAATTTATGAACGATTGGAAGCCATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCAACCATCCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAAGAGAATTTGAAGAAGTTTGACCGAATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATGCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTAGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTTCCTCGATGAAGGAATACATTGCCCGATTTGGTCATGGATCTGCAAAACTAGCTCGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAACGTGGTGGACTCACAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTCGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATCGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACATTACTGAAGCTAATGACTGGTGATCTGGTTCCTATAGATGGCATGGTTCGACGGCACAATCATCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACTTGGAATTGTCTGCTCTTCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAAAGGATGAGAGCAGCTATTGGGAAATTTGGACTGTCAGGTAAAGCGCAGGTGATGCCAATGAAGAATTTATCAGATGGGCAGAGGAGCCGCGTGATATTTGCATGGTTAGCTTATAGACAGCCTCATTTGCTGCTTCTGGACGAGCCAACTAATCATTTGGATATTGAAACAATTGACTCGTTGGCTGAAGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTCAGTCATGATTTTAGGCTCATTAATCAGGTGGCCCATGAGATATGGGTGTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 1797 0.4558 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSKTTSSSEKAADKLADGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDTELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGETLERIYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIMHMQNKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00546 598 Gene3D - 352 596 IPR027417 -
Cca10g00546 598 CDD ABCF_EF-3 383 574 - -
Cca10g00546 598 Pfam ABC transporter 283 359 IPR032781 -
Cca10g00546 598 PANTHER - 1 598 - -
Cca10g00546 598 SMART AAA_5 408 596 IPR003593 -
Cca10g00546 598 SMART AAA_5 96 298 IPR003593 -
Cca10g00546 598 Gene3D - 72 336 IPR027417 -
Cca10g00546 598 CDD ABCF_EF-3 72 289 - -
Cca10g00546 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 577 IPR027417 -
Cca10g00546 598 Coils Coil 290 310 - -
Cca10g00546 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 598 IPR003439 GO:0005524
Cca10g00546 598 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524
Cca10g00546 598 Pfam ABC transporter 90 244 IPR003439 GO:0005524
Cca10g00546 598 Pfam ABC transporter 399 530 IPR003439 GO:0005524
Cca10g00546 598 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 598 - -
Cca10g00546 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 312 IPR003439 GO:0005524
Cca10g00546 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 317 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00546 Cca-Chr10 5894746 5898876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00546 92 270 Calmodulin-binding Proteins AT2G36910 28.962 5.58e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00546 K06185 - gmx:100785099 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00546 10 5894746 5898876 Cca10g00546 10 5894746 5898876 ECH
Cca10g00546 10 5894746 5898876 Cca04g00826 04 8461473 8466889 PCT