Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00540 ATGCTGTCTGCCCCCACCGTGTTCTGCATGTCGTTCGTGAAGGACGCTGCGGGGTACATAGTGGTTCGCTTCTTGATAGGCTTCTCCTTGGCCACGTTTGTGTCGTGCCAGTACTGGATGAGCACCATGTTTAATAGCAAGATTATTGGCCTTGCGAATGGGACTGCGGCCGGGTGGGGGAACATGGGTGGTGGTGCCACTCAGCTCATAATGCCTTTGGTCTATGAGTTGATTAAACGAGCTGGGGCTACTCCCTTCACTGCTTGGAGAATTGCGTTCTTCGTTCCTGGCTCCATGCATGTCATCATGGGGATCTTGGTGTTGACACTAGGCCAGGACTTGCCTGATGGAAACCTTGGGGCCTTGCAGAAGAAGGGTGATGTTGCTAAAGACAAGTTTTCCAAGGTGCTATGGTACGCCATAACAAATTACAGGACATGGATTTTTGCCCTCCTCTATGGGTACTCAATGGGAGTTGAATTGACAACCGATAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTTCACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAACTTGGTTGCTCGACCCTTTGGTGGATATGCTTCTGATGTTGCAGCACGGTTATTTGGCATGAGAGGCAGACTTTGGACCCTATGGATCCTCCAAACCTTAGGAGGGGTTTTCTGCATGTGGCTTGGTCGTGCCAATTCTCTTCCTATTGCAATATTGGCTATGATTTTGTTTTCTATAGGAGCTCAAGCTGCATGTGGTGCAACTTTCGGCATCATTCCTTTCATCTCAAGGAGGTCTTTGGGGATCATATCAGGTCTTACTGGTGCAGGTGGCAACTTTGGCTCTGGACTAACACAATTGGTCTTCTTTTCAAGCTCCAAATTCTCCACTGCCTCAGGTCTCTCATGGATGGGTGTGATGATAGTGGCTTGCACTCTTCCTGTGAGTATTGTTCACTTCCCTCAGTGGGGTGGCATGTTCCTACCACCCTCAAAAGACGTCAACAAATCCACTGAAGAATTCTATTACACCTCTGAATGGGATGAGGAGGAGAGAAAGAAGGGCTTGCATCAGCAAAGTCTCAAGTTTGCTGAGAATAGCCGATCCGAGAGAGGGAAGCGTGTGGCATCAGCCGCAACACCACCAAATACAACTCCCTCTCATGTCTAG 1188 0.4832 MLSAPTVFCMSFVKDAAGYIVVRFLIGFSLATFVSCQYWMSTMFNSKIIGLANGTAAGWGNMGGGATQLIMPLVYELIKRAGATPFTAWRIAFFVPGSMHVIMGILVLTLGQDLPDGNLGALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQTLGGVFCMWLGRANSLPIAILAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSSSKFSTASGLSWMGVMIVACTLPVSIVHFPQWGGMFLPPSKDVNKSTEEFYYTSEWDEEERKKGLHQQSLKFAENSRSERGKRVASAATPPNTTPSHV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00540 395 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 392 - -
Cca10g00540 395 MobiDBLite consensus disorder prediction 360 395 - -
Cca10g00540 395 Pfam Major Facilitator Superfamily 5 290 IPR011701 GO:0022857|GO:0055085
Cca10g00540 395 Gene3D MFS general substrate transporter like domains 129 329 IPR036259 -
Cca10g00540 395 MobiDBLite consensus disorder prediction 360 378 - -
Cca10g00540 395 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 392 IPR044772 GO:0015112
Cca10g00540 395 SUPERFAMILY MFS general substrate transporter 3 323 IPR036259 -
Cca10g00540 395 Gene3D MFS general substrate transporter like domains 1 118 IPR036259 -
Cca10g00540 395 CDD MFS_NRT2_like 1 321 IPR044772 GO:0015112
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00540 Cca-Chr10 5827449 5829370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00540 1 395 Inorganic Solute Cotransporters AT5G60770 79.747 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00540 K02575 - gmx:100782969 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00540 10 5827449 5829370 Cca10g00540 10 5827449 5829370 ECH
Cca10g00540 10 5827449 5829370 Cca04g00821 04 8433187 8436324 PCT