Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00537 ATGAATTCAATGGAGTCAGATAATAAGATGAATAGTGAAGAGAAGGGACATGAAGATGCAGTGATGGAGAACAAGAAACGTGGTGGGAGAGTGGACAAGAGGGATCGTCACTCGAAGGTTAATGGAAGAGATCGTCGTGTTCGTTTGTCAACAATATGTGCTGCACGTGTCTTCCAACTCACACGTGAGTTAGGTTACAAGACTGATGGTGAGACCATTGAGTGGCTCTTGCGCATGGCTGAGCCCTCCATTATCGCCCTCACCGGCACCGGCATTTCGCCTTCCGCGTCGGTGGCGCCCCCGGACGCTGTTGCTGCTCAAGATGCTAACGAGGTCGCCGATAACGTTACTGAGGAGCCGAATCCATCTTTTGATTTCGACTTTGATTTGTTGGACTCGGATTTTGAGATTTTAATGAATTGTGATTAA 429 0.4802 MNSMESDNKMNSEEKGHEDAVMENKKRGGRVDKRDRHSKVNGRDRRVRLSTICAARVFQLTRELGYKTDGETIEWLLRMAEPSIIALTGTGISPSASVAPPDAVAAQDANEVADNVTEEPNPSFDFDFDLLDSDFEILMNCD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00537 142 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 26 118 - -
Cca10g00537 142 MobiDBLite consensus disorder prediction 8 42 - -
Cca10g00537 142 Pfam TCP family transcription factor 33 91 IPR017887 -
Cca10g00537 142 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 118 IPR005333 GO:0003700
Cca10g00537 142 MobiDBLite consensus disorder prediction 1 42 - -
Cca10g00537 142 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00537 Cca-Chr10 5775855 5776283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00537 34 96 TCP Transcription Factor Family AT5G23280 74.603 1.53e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca10g00537 TCP 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00537 - K16221 ccaj:109811636 253.062