Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00536 ATGTGCAAGACAAAGATGGCAATCGACGCGGCCAGCCCCACCCGAACCTCTCGCACCGAACAACGCGCCAACCAAAGCCCAAGAACATCCTCCTCCAGGCCCACTCCGGGGCCCATCGCTTCTTTCTCAGAGAAaccatccacctcaagcagcaccaccaccaccgcgccctacaccggctccaccGGCTACAGGCTATCCTCCGACACCTCCATCTCCAGCCGCACCTCCCTCACCTCCCTCCGCGACACGCTCCCTGAGAACCCTCACATCTACCAATTCTCCGAAATCTGCGCCGCCACCAACAACTTCCTCGCCAAGCGCCACTCCTCCTCCACGCCCTGCTGGCGCTGCACGCTTCGCGGCGCCGACGTCATTGTCTTCCAGCGCAAGTTCCGCCGCATGCTCCAAACCTCTCAGCTCCAGAACCTCCTCGCCATCGTCTGCCGCAGCCACCACGTCAGCATCATCAAACTCCTCGGCGCCACGGTCTCCGGCGACCACATCTACCTCGTCTACGACTTCGTCCACGGAGCCAGCCTCTCCGACTGCCTCCGCAGCAAGAACAACGCGCACTTCACCGTCCTCTCCACGTGGATGTCCAGAATGCAGGTCGCCGCGGATCTCGCTCACGGCCTCGATTACATTCACAACAAAACCGGTCTGAACATCAACTTCGTTCACAGCCACATCAAGACCAGCGGAATCATCGTCACTGAGCCTTCCTTCAACGCTAGGGTTTGCCACTTCGGCACCGCGCAGCTCTGCGGCGAAATCGACCTCCAGACCGACAAATTAAGCGAAATCCGCGAGGAAACGCCTTCTCCGGCGAGATCCAAGCAATTCGAGGGCGTGCGAGGGTACATGGCGCCGGAATTTCAAGTCTCCGGCGTCGCCACTCAGAAATCCGACGTGTACGCTTTCGGAGTGGTGATATTGGAGCTTTTGTCCGGGGAGGAGCCGTTGAAGTTCAGGTTCGACGAGAAGACGCGCGGTTTCGTGAAAACGTCGGTGATCGAGGCGGCAATGGCCGCCGTAGATGGCGGCGAAGGGAGGCTGAGGAATTGGGTGGATCGGAGATTGAACGATTCTTTTCCGGTGGATGTTGTGGAGAAGTTGACACGTGTCGCGCTGGAGTGCGTACACGTGGATCCAGATAAGAGGCCCAACATGGGACGCGTCGCTGGCAAGATCTCAAAGTTTTATTTGACCTCTAGGAAGTGGTTCGATAGCATCAAAATGCCTGATATCACCGTTTCGTTGGGTCCTCGATAA 1275 0.5569 MCKTKMAIDAASPTRTSRTEQRANQSPRTSSSRPTPGPIASFSEKPSTSSSTTTTAPYTGSTGYRLSSDTSISSRTSLTSLRDTLPENPHIYQFSEICAATNNFLAKRHSSSTPCWRCTLRGADVIVFQRKFRRMLQTSQLQNLLAIVCRSHHVSIIKLLGATVSGDHIYLVYDFVHGASLSDCLRSKNNAHFTVLSTWMSRMQVAADLAHGLDYIHNKTGLNINFVHSHIKTSGIIVTEPSFNARVCHFGTAQLCGEIDLQTDKLSEIREETPSPARSKQFEGVRGYMAPEFQVSGVATQKSDVYAFGVVILELLSGEEPLKFRFDEKTRGFVKTSVIEAAMAAVDGGEGRLRNWVDRRLNDSFPVDVVEKLTRVALECVHVDPDKRPNMGRVAGKISKFYLTSRKWFDSIKMPDITVSLGPR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00536 424 ProSiteProfiles Protein kinase domain profile. 64 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00536 424 PANTHER OS09G0572100 PROTEIN 1 424 - -
Cca10g00536 424 MobiDBLite consensus disorder prediction 10 70 - -
Cca10g00536 424 SUPERFAMILY Protein kinase-like (PK-like) 91 396 IPR011009 -
Cca10g00536 424 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 424 - -
Cca10g00536 424 MobiDBLite consensus disorder prediction 1 70 - -
Cca10g00536 424 Pfam Protein kinase domain 138 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00536 424 Gene3D Phosphorylase Kinase; domain 1 66 175 - -
Cca10g00536 424 Gene3D Transferase(Phosphotransferase) domain 1 177 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00536 Cca-Chr10 5763955 5765898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00536 87 408 Receptor kinase-like Gene Family AT1G51940 31.045 1.17e-41 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca10g00536 PK_Tyr_Ser-Thr 5.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00536 - - gmx:100792694 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00536 10 5763955 5765898 Cca10g00536 10 5763955 5765898 ECH