Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00535 ATGAGCAACTTAAGGCCTGAGTCTCATGTAGCACAGCAAATTCGGCGTGAGAAATTGAGAATCCACAACAGTTCTCAGCATCTACACGAATTCCCTAACAATCTTGAACAGTTATCGTTACACCCGGGGTTTAACATGGACCTTCTTCAAGTTAGGAATGTTAGAAACGCCAACAACATGCTTGATGAAGCACCTGTTTATTCACCAGAAACGCCAAGGAACGCGTTGGAGTATCATCATCAGGAACTAGGTGCAGCTGAACCGAGTAATAGGCCGATGATGAATCAGTATGGTTCATTTCCCCATTCCATGTCTGCAATTCATTCTTCCCATAAAGAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCCCCCCATCAAGGATCTGATTGGTTTGTAAACTATGCAAGCAATGCCAACCCTTTCTTGTCTTCTGAGCTCAACAATGTGTCATCTTACAATGAACTCATGGATGTACAGTGTAGCAATGCTTCTGATGAAATACGGGGTAGAGAAATTCAAAAGCAATTAGGTGTACTGCATAATAATAATCCTCCGTCATCCTCACTTTATCAGAATGCTTTGCAAGATATTGTGAAGTCAGCTTCTGTCAGTTCCCACAGACATGACATGCCTTCACTTATGCAACAAAATGACTACAACATTTGGGTGGGGAATGCTAGTGAAGTTGAGCTTCAACCAAGTTACGAAAATCAGCCAAATCAGTTGCGTTTTGGGTGGACTAATCGAACACTTGCTAATACCCTTAGTGATCCACTTCCTCAGAGCTTATCCTTGTCGCTTTCATCGAACACACAACCTAAACCTGTTTCTCAGCTTGAACAAGGGTCTGCATCAGAGGATCTTCAATCTGGATCTGGCATTTCTAAGTATGTGAAATCAATTGTCAAGCCGTCTATAGTTTCCAGAGATAATGGGAAATCACTTCAAGACACGGTGGGGATGCCTTCAAGGACCATTAGTTATCGAAATGTGGGACCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGCACAACAGTTGTTAGATGAGATTTGCTGTCTATCTGGTGCAAAATTTGCAAAAGTTTATGATGTTTCTGAGAGGGTGTCTTCTGAAGTTAGTGCTTCTACTTCTTCTGATACTGTTACTGTTAAGGAAACTGGGGTTGTTGCAAAAGGTAGTAGTTCAGGTTCTTCATCATCAATGTTGTATAATATTTCAAAGGAAAATAGTGCTGATCGGGGAGTTGGAAGTAGCTTTGGTCTTTCTTCACGGCCAGATTATCAACAGAAGAAAGCTAAGCTTTTGTACATGCAAGAGGAGGTTACAAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTAGTTTCATCGTTCGAGTCAGTTGCAGGTCTTAGTTCTGCTACTCCTTACATCCCCATGGCTCTGAAGTCAGTATCAAAACACTTCAAGTGCCTAAAAAACTCCATCTCAGATGAGCTGAAACTAATAAGCGAAGCCTTGGGAGAAGATTTGTCAATACCTAGAACTAGTACTTGTAGTAAAGCTGATACTTCTACTATGGGAAGGATAAGATGCATGGACCAAAGCTTTTTGAAGAACAAATCTGGCAGGGACCTTATTGAACCCCAACATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACGGACACTGATAAACACTTGCTGGCTAGTCAAACAGGTCTTTCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGGACATCCTCGAAGGAGATGTGTGGTAAAAATGAGGGAACTTCTTCTGGCACTGAAGGTGATACAAGACAACCTAGACTGGACAAACCTTTGAGCAATGTTGGAATGAATACAATACCTGAAAACCAATTTCATAGTATGGAGACGGGTTCATCCAATGCTGAGGAAAGTGGGTTCAATTCAGAAGAATGGAGTCAAGAGAAGCGGTCTAAATTAGAATGCCACATGAGTTCAAACATGGATGATACATTGATGGGTTTTGTTCCATATCGACGAGGTGGGCTTGGGTCCGTGTCACTGACATTGGGTCTTAGGCATGGCGTTGAAGGAGGACAACACCAACAATTGCATGACCTTGAAGGGCACATGATGCATGGCTTTGTGGGCTGA 2286 0.4261 MSNLRPESHVAQQIRREKLRIHNSSQHLHEFPNNLEQLSLHPGFNMDLLQVRNVRNANNMLDEAPVYSPETPRNALEYHHQELGAAEPSNRPMMNQYGSFPHSMSAIHSSHKEQCELRNLGNWRNSAPHQGSDWFVNYASNANPFLSSELNNVSSYNELMDVQCSNASDEIRGREIQKQLGVLHNNNPPSSSLYQNALQDIVKSASVSSHRHDMPSLMQQNDYNIWVGNASEVELQPSYENQPNQLRFGWTNRTLANTLSDPLPQSLSLSLSSNTQPKPVSQLEQGSASEDLQSGSGISKYVKSIVKPSIVSRDNGKSLQDTVGMPSRTISYRNVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSGAKFAKVYDVSERVSSEVSASTSSDTVTVKETGVVAKGSSSGSSSSMLYNISKENSADRGVGSSFGLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVVSSFESVAGLSSATPYIPMALKSVSKHFKCLKNSISDELKLISEALGEDLSIPRTSTCSKADTSTMGRIRCMDQSFLKNKSGRDLIEPQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHLLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTSSKEMCGKNEGTSSGTEGDTRQPRLDKPLSNVGMNTIPENQFHSMETGSSNAEESGFNSEEWSQEKRSKLECHMSSNMDDTLMGFVPYRRGGLGSVSLTLGLRHGVEGGQHQQLHDLEGHMMHGFVG 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00535 761 SMART prehox3 342 506 IPR006563 -
Cca10g00535 761 Gene3D - 564 626 - -
Cca10g00535 761 ProSiteProfiles 'Homeobox' domain profile. 558 621 IPR001356 GO:0003677
Cca10g00535 761 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 30 740 - -
Cca10g00535 761 MobiDBLite consensus disorder prediction 634 666 - -
Cca10g00535 761 MobiDBLite consensus disorder prediction 266 294 - -
Cca10g00535 761 CDD homeodomain 561 622 IPR001356 GO:0003677
Cca10g00535 761 SUPERFAMILY Homeodomain-like 563 628 IPR009057 -
Cca10g00535 761 Pfam Associated with HOX 347 505 IPR006563 -
Cca10g00535 761 SMART HOX_1 561 625 IPR001356 GO:0003677
Cca10g00535 761 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 740 - -
Cca10g00535 761 MobiDBLite consensus disorder prediction 636 653 - -
Cca10g00535 761 Pfam Homeobox KN domain 578 617 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00535 Cca-Chr10 5717851 5723973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00535 342 738 Homeobox Transcription Factor Family AT2G16400 33.835 1.07e-63 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca10g00535 POX 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00535 - - gmx:100790583 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00535 10 5717851 5723973 Cca10g00535 10 5717851 5723973 ECH
Cca10g00535 10 5717851 5723973 Cca04g00814 04 8297028 8304509 PCT