Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00531 ATGGGAAGCAAATGGAGGAAAATGAAGCTTGCTATTGGGATCAACATGTGCGTTCAGCTCCCCAAAACCATCGATCACTCCTcctcctccctcccctccgccaccaccttctccgaccgcccttcgccctccactcccacatcctccgccctccgcctctccAGATCCAAGTCCAAATCCTCCAAGGGGACATGTGCAATTTGCCTGAACTCAATGAAACCAGGGCAGGGACATGCCATTTTTACTGCGGAATGTTCTCACTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTCCATTTCCAATGCATCACATCTAATGTGAAGCACGGGAACCGGATTTGCCCCGTCTGCAGAGCAAAATGGAAGGAGGTTCCTTTCCAGAGTCGTGTTTCTAAGGTTTCCCATGACATCAACCGAATAAACTCGCCGCGAAACGATTCCTGGACAACTGTCCTAGGGAGGATTCCTCCCCAACATGTTGGTACAGGTCCACAAAATGCATCATCTCATAATAATGTTACTGAACCAGCTATCTTTGATGATGATGAAGAAGTCTTGGAACAACAAATTTCAGTTACTGATGACATGAACGAGGCTGAGCGCAATGCAATAAACAAAATGGAGATCAGAATATATCCTGAAGTTTCAGCTGTTCCAAAGTCAGCCTCTCATGATAACTTTGCTGTATTGATTCATCTCAAAGCCCCCCGGAGAAAACAAAATAGTGACAGAAACAATAATGAATCACCATCAGCTCAAAATTCTCGTGCTCCAATTGATCTTGTCACGGTTCTTGATGTGAGCGGTAGCATGTCAGGTACAAAGATTGCACTACTAAAACGAGCCATGGGTTTTGTCATACAGAATCTGAGTTCATCAGACCGGCTTTCTGTCATCACCTTCTCTTCCACAGCGCGCCGCATCTTTCCTCTTCGGAGGATGACTGATGCTGGAAAACAGGATGCACTGCAGGCAGTTAATTCTTTGATTCCAAATGGTGTTACAAACATTGCTGAAGGATTAAAGAAAGGTGCCAAAGTGTTTGTTGATCGCAGGTGGAAGAACCCAGTTGGCAGTATCATATTACTATCAGATGGACAGGATTCATCCATAAACAGTAGCAGGCCTAGTTTTGGAAATGATTACCGGTCACTTGTCCCAAATTCCATTCATCGTGACAATGGTGATGGTTTGCATATACCAGTGCATGCATTTGGCTTTGGTGTTGACCATGATGCTTCTGCAATGCACTCAATCTCTGAGATATCTGGGGGTACTTTTTCTTTCATTGAAGCTGAGGATGTGATCCAGGATGCATTTGCACAGTGCATTGGAGGACTATTGAGTGTGGTGGTTCAGGAATTACAACTAGAAGTCCAGTGTGTTCATCCCCATCTGCATCTTGGTTCTGTAAAAGCAGGAAGTTACCAAACTAGCTTGATTGACAGTGGAAAAATGGCATCTATCAGGGTGGGAGATCTATATGCTGAAGAAGAAAGAGACTTTTTGGTGACAGTGAATGTGCCAGTTGATAAGTCCAGTTCTGAGATGTCTTTGTTGATAGTTAAAGGTGTTTATAGGGACCCTGTCACAAAGGAAATGGTGGCATTGGGAGTAAATAGTGAAGTAAAGATTGAGAGACCTGATGTAGCTAGAGATGTAGTTGTGTCAATAGAAGTAGACAAGCAGAGAAACAGACTTGAGGCTGCTGAGGCAATGGCCGAGGCTAGAGCTAAAGCCGAACGCGGAGATTTGACTGGTGCAGTTTCTGTGCTAGAGAGATGTCACCAGGCATTGAATGAAACTATATCTGCCAAAGCTGGTGATGAACTATGCATTGCTCTCTCTGCTGAACTGAAGGAGATGCAGGAAAGGATGGCGAACCAACGTGTTTATGAACAGTCTGGAAGGGCTTATGTTCTCTCAGGATTGTGTGCTCATTCAGGGCAAAGGGCAACTGCAAGAGGAGATTATTCAGACAGCACCAGTTTTGTGAATGCATACAGAACACCTTCCATGGCAGACATGGTTACTCGTTCTCAAACCATGCTTTTGAGGACTCCACAACCTGACAACCTTAGCTCAGTGTATCGGTTGGAAGAAATGAAGCCTGAGCTCAATGTTGCTGTTGCTCTTGTTATTAGCTTGCTCTGTATTCAGCACTCATTTTCTGATGAACTTTCTGATACTGCCCTAAAGAAGTGGAAATGCAAATGCTCTTCTTTCCAAGGAAACCATATATACTCTCTATCAAATTGTTCCAAGTCATGTGATTGCCATTCAGATTCAGAAGAGAGTGCATCCATATGGACATGCAAATGTGATCCGAATGGATTTCCTAAAGTGACAGCAGATGGCCATAACCTTAATTGTTTCAATGCCTGCAGATGTACCTGGGGAACTGACAGGATGCCCCTTGTTTCAAAGAAACTAAGTTCGAGCAAGATTGTGGTAGTTATTCTATCAATGTGTCTTGTAAGCACAACTGTTGCATTTCTTACCTCAGTTGTATGTCATGTCTGCCAGAGACGCAGCTTTCCTATCCAATCATCAATGATATCATCAGATAAAGAAACGAGTTACAATAGTACCTCCAACTTAATTATTCATAGTACTTCTTCAGTGCCAGAAACAAAAGTTGTTATACATTCTCCAATTAGTCATATTAGAGGATGCTTTCCGAAGGCCTATTTGTTGTTTGGTAGCCAAAGAGAAACCTTTCAAGGAAATATTATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCCAATCTAATTGGATTTGGTGGAAGCAGTTATGTATACCGCGGTAGGCTAAAAGATGGTAGTAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTCACAGAGATTGAACTATTGTCTAGGCTTCATCATTGTCATCTGGTGCCATTGGTGGGATACTGCTCAGAATTAAAAGGAAAAAATGTTCAAAGGTTGCTAGTGTTTGAATACATGACTAATGGAAATTTAAGGGACCGCTTAGATGGAATTTTTGGAAAAAAAATGGATTGGTCTACTCGTGTTACGATTGCATTAGGAGCTGCAAGGGGCTTGGAATATCTTCATGAGGCAGCTGCTCCAAGAATTCTGCACAGAGATGTCAAATCAACCAACATTCTTCTGGATAAAAATTTCCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGAGCTGATGATCACCCTAGTTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCAATTGGAAGAGCCTCTCTTGAGTCAGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCTATCCATAAATCTGCAGGGAAAGAAGAAAGTCTTGTTATATGGGCAACTCCTCGCTTACAAGATAGTAGGCGAGTAATAATGGAGTTGGTTGATCCGCAATTGAAAGGAAACTTCCCCCAAGAAGAGGTGCATATAATGGCATACTTAGCAAAGGAGTGCTTGTTGTTGGATCCAGACACTAGACCAACAATGAGTGAAGTTGTTCAAATTATTTCAAGTATTTCCCCGGGCAAATCTAGAAGGAGAAGAAGCATTCCAGTGAGCCTTTTTCAGGAACTGGAGGATGCAGAGAAGCAAAGACAAGATCAATCAAGTAGATTTCTATCTCATAATTTATTGCCACTAAGCAATGACTATAATATTCATTTTGTGAACGAAAATAAAGATGAACATACAGCTTCAACTGAGCATATGGAGAGTTCGATCCTCTTATCTTCAAAAGAAAAGGTGATGGATCCACCTCCTCCTCCAACCACACCGTTGCTAAGGCCAGCTCCTCCTAGAAGAGGATTCTTGGATACATGCTTATGGTTTCTTTGCTGCTGTGGCCTATTCAGTTGCTGCTTTCCTCCCCTTTTCGAGACAGGGCCTCCTCCACTTTAG 4089 0.4028 MGSKWRKMKLAIGINMCVQLPKTIDHSSSSLPSATTFSDRPSPSTPTSSALRLSRSKSKSSKGTCAICLNSMKPGQGHAIFTAECSHSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFHFQCITSNVKHGNRICPVCRAKWKEVPFQSRVSKVSHDINRINSPRNDSWTTVLGRIPPQHVGTGPQNASSHNNVTEPAIFDDDEEVLEQQISVTDDMNEAERNAINKMEIRIYPEVSAVPKSASHDNFAVLIHLKAPRRKQNSDRNNNESPSAQNSRAPIDLVTVLDVSGSMSGTKIALLKRAMGFVIQNLSSSDRLSVITFSSTARRIFPLRRMTDAGKQDALQAVNSLIPNGVTNIAEGLKKGAKVFVDRRWKNPVGSIILLSDGQDSSINSSRPSFGNDYRSLVPNSIHRDNGDGLHIPVHAFGFGVDHDASAMHSISEISGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQLEVQCVHPHLHLGSVKAGSYQTSLIDSGKMASIRVGDLYAEEERDFLVTVNVPVDKSSSEMSLLIVKGVYRDPVTKEMVALGVNSEVKIERPDVARDVVVSIEVDKQRNRLEAAEAMAEARAKAERGDLTGAVSVLERCHQALNETISAKAGDELCIALSAELKEMQERMANQRVYEQSGRAYVLSGLCAHSGQRATARGDYSDSTSFVNAYRTPSMADMVTRSQTMLLRTPQPDNLSSVYRLEEMKPELNVAVALVISLLCIQHSFSDELSDTALKKWKCKCSSFQGNHIYSLSNCSKSCDCHSDSEESASIWTCKCDPNGFPKVTADGHNLNCFNACRCTWGTDRMPLVSKKLSSSKIVVVILSMCLVSTTVAFLTSVVCHVCQRRSFPIQSSMISSDKETSYNSTSNLIIHSTSSVPETKVVIHSPISHIRGCFPKAYLLFGSQRETFQGNIIQFSFAELENATENFSASNLIGFGGSSYVYRGRLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGIFGKKMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNFQAKITDLGMAKNLRADDHPSCSNSPARMQGTFGYFAPEYAIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLQDSRRVIMELVDPQLKGNFPQEEVHIMAYLAKECLLLDPDTRPTMSEVVQIISSISPGKSRRRRSIPVSLFQELEDAEKQRQDQSSRFLSHNLLPLSNDYNIHFVNENKDEHTASTEHMESSILLSSKEKVMDPPPPPTTPLLRPAPPRRGFLDTCLWFLCCCGLFSCCFPPLFETGPPPL 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00531 1362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1080 1092 IPR008271 GO:0004672|GO:0006468
Cca10g00531 1362 MobiDBLite consensus disorder prediction 29 53 - -
Cca10g00531 1362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 152 IPR013083 -
Cca10g00531 1362 Pfam von Willebrand factor type A domain 289 470 IPR002035 -
Cca10g00531 1362 Gene3D Transferase(Phosphotransferase) domain 1 1036 1250 - -
Cca10g00531 1362 CDD RING-H2 65 147 - -
Cca10g00531 1362 ProSitePatterns Protein kinases ATP-binding region signature. 961 983 IPR017441 GO:0005524
Cca10g00531 1362 SUPERFAMILY Protein kinase-like (PK-like) 936 1232 IPR011009 -
Cca10g00531 1362 MobiDBLite consensus disorder prediction 262 284 - -
Cca10g00531 1362 ProSiteProfiles Protein kinase domain profile. 955 1236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00531 1362 ProSiteProfiles Zinc finger RING-type profile. 65 147 IPR001841 -
Cca10g00531 1362 CDD STKc_IRAK 961 1236 - -
Cca10g00531 1362 SMART serkin_6 955 1237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00531 1362 SUPERFAMILY RING/U-box 127 153 - -
Cca10g00531 1362 SUPERFAMILY vWA-like 285 473 IPR036465 -
Cca10g00531 1362 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 732 1303 - -
Cca10g00531 1362 PANTHER OS01G0253100 PROTEIN 732 1303 IPR045271 GO:0004714|GO:0006468
Cca10g00531 1362 CDD vWA_C3HC4_type 288 460 - -
Cca10g00531 1362 Pfam Protein kinase domain 957 1231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00531 1362 ProSiteProfiles VWFA domain profile. 289 473 IPR002035 -
Cca10g00531 1362 Pfam VWA / Hh protein intein-like 638 711 IPR032838 -
Cca10g00531 1362 Gene3D Phosphorylase Kinase; domain 1 930 1035 - -
Cca10g00531 1362 Gene3D von Willebrand factor, type A domain 289 474 IPR036465 -
Cca10g00531 1362 MobiDBLite consensus disorder prediction 181 203 - -
Cca10g00531 1362 SMART VWA_4 287 469 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00531 Cca-Chr10 5617048 5630228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00531 731 1262 Receptor kinase-like Gene Family AT2G28250 53.803 2.77e-180 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Cca10g00531 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00531 - - gmx:100781344 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00531 10 5617048 5630228 Cca10g00531 10 5617048 5630228 ECH
Cca10g00531 10 5617048 5630228 Cca04g00804 04 8127487 8132787 ECH
Cca10g00531 10 5617048 5630228 Cca04g00803 04 8117984 8124491 PCT