Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00530 ATGGCTTTTGGTAATTCAAGATCTGCAAGGTTTGAAGATGATCCGGAACTAGCAAAATTTCCCACGACTAAGGGTGAAAATGGTGCTAAGATTAAATACCACATTGATGGGACACAAATACCTGAACCAAGTTCCAAAGTGTCTCACAAAAAGGTGACAGGGAAGTTCTTGAAAGCTAGAATGTTATCAAGAGTGTTCTCAGAAGACTACGACAGAGTAAAACGAAGAGTATTAGATCCTCGAGGACAAACTCTTCACCGAtggaacaagattttcttggtggcatgtttagtgtctttatttgtggaccctttgttcttttatctgccagttgttcgagatgaagtctgcattgatattggaataactcttgaagttatcctcacattggtaagatcagtagtggatgtcttttacgtgattcagattttgatgaagtttcgtacggcttttgttgctccttcttcaagggtttttgggagaggagaacttgttgtaggatattctaagattgcagttaggtaccttcgcaagggtttctggttagactttgttgctgccctgccccttcctcaggtgttaatttggattgttattccaactcttaggggttcaaccatggccaacacaaaaaatgtccttcgctttttcatcattttccaatattttccgaggctagttttgatttttccactttcatcacaaattgtaaaagctacaggggttgtgacagaaacagcttgggcaggggctgcttacaacctgatgctttacatgctggctagccatATTTTAGGGGCTTGTTGGTACCTACTAGCAATAGAACGTCAAGAAGCATGTTGGAGAAGTGTGTGTGATTTGGAGAAGTCATTTTGTGAATACAGATTCTTTGACTGCCACAGGGTTAAAGATGCTCTCAGGGTCTCCTGGTTTATAGCAAGTAATATCACAAATTTGTGCTCACCAAATGCAAACGATGACTTCTATCAGTTTGGTATATATGCTGATGCCGTGACTTCAAAAGTTACATCGTCCGGATTCTTTAATAAGTACTTTTTTTGCCTGTGGTGGGGCCTAAGAAATTTGAGTTCTCTGGGGCAAGGCCTTCTTACTAGCACATATGTTGGAGAAATAATGGTTGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTCGCGTTGCTAATTGGTAATATGCAGACATATCTCCAGTCAACCACTGTTAGATTAGAAGAATGGAGGGTGAAAAGAACTGATACTGAACAATGGATGCATCACAGGCAACTACCTCCTGATCTAAGAGAATCAGTGCGTAAATATGACCAATACAAATGGTTGGCTACACGAGGAGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCCATTGATCTTCGGAGAGACATCAAGCGCCACCTCTGTCTCGATCTAGTCCGAGGAGTACCATTATTTGATCAAATGGACGAGAGAATGCTGGATGCAATATGTGAAAGACTAAAGCCTGCATTGTGCACCGAGGGAACCTTTCTTGTGCGCGAGGGTGATCCTGTGAACGAAATGCTCTTCATAATACGAGGCCATCTTGATTCGTACACCACCAACGGAGGGCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGGGAGGAGCTCCTAACATGGGCCTTGGACCCGCGGCCCAGTGTGATACTCCCTTCATCCACTCGAACAGTGAAAGCCATCTCAGAAGTAGAGGCATTCGCACTGATAGCAGAAGACCTGAAATTCGTTGCATCCCAATTCAGAAGACTACACAGCAAACAACTGAGACATAAATTCAGGTTTTACTCACACCAGTGGAGAACCTGGGCTGCATGTTTCATTCAAGCCGCCTGGAGAAGGCATAAGAAACGGAAGGAAGTGGCTGAACTGAGGGCGAGGGCAACTAATAATGCTGACCCCGAAACACCAACCTATGCAAAAAGGGTTGCCATCACTACTAGGAAACCTCTCAATGTCAACATGCATTCTTCCACACATTCTGGAGTTGTCAGCTCTTTGCAGAAGCCAGAAGAACCAGATTTCTCTCTTGATGAATAA 2091 0.33 MAFGNSRSARFEDDPELAKFPTTKGENGAKIKYHIDGTQIPEPSSKVSHKKVTGKFLKARMLSRVFSEDYDRVKRRVLDPRGQTLHRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGITLEVILTLVRSVVDVFYVIQILMKFRTAFVAPSSRVFGRGELVVGYSKIAVRYLRKGFWLDFVAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYFPRLVLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLAIERQEACWRSVCDLEKSFCEYRFFDCHRVKDALRVSWFIASNITNLCSPNANDDFYQFGIYADAVTSKVTSSGFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPDLRESVRKYDQYKWLATRGVDEEALLKGLPIDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEVAELRARATNNADPETPTYAKRVAITTRKPLNVNMHSSTHSGVVSSLQKPEEPDFSLDE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 132 142 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca10g00530 696 MobiDBLite consensus disorder prediction 669 696 - -
Cca10g00530 696 Gene3D Jelly Rolls 480 600 IPR014710 -
Cca10g00530 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 696 - -
Cca10g00530 696 Gene3D - 91 406 - -
Cca10g00530 696 SMART cnmp_10 482 613 IPR000595 -
Cca10g00530 696 MobiDBLite consensus disorder prediction 669 683 - -
Cca10g00530 696 ProSiteProfiles cAMP/cGMP binding motif profile. 482 579 IPR000595 -
Cca10g00530 696 ProSiteProfiles IQ motif profile. 618 647 IPR000048 GO:0005515
Cca10g00530 696 PANTHER - 4 696 - -
Cca10g00530 696 MobiDBLite consensus disorder prediction 1 24 - -
Cca10g00530 696 SUPERFAMILY cAMP-binding domain-like 412 608 IPR018490 -
Cca10g00530 696 CDD CAP_ED 482 613 IPR000595 -
Cca10g00530 696 Pfam Ion transport protein 88 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca10g00530 696 Gene3D Helix hairpin bin 409 473 - -
Cca10g00530 696 SUPERFAMILY Voltage-gated potassium channels 79 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00530 Cca-Chr10 5608226 5612458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00530 54 693 Ion Channels AT2G28260 77.500 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00530 K05391 - gmx:100786868 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00530 10 5608226 5612458 Cca10g00530 10 5608226 5612458 ECH
Cca10g00530 10 5608226 5612458 Cca04g00801 04 8046031 8050783 PCT