Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00523 ATGTCTGAGGATAGTGCTAATATGAAGGACTCTTGGTTTTTCGACAACAACTTTAATGGTCTCTCGGATGAGATTTTTGATGATGTCGTCAATTTTTTTGATTTCCCGCTGGAAGATGTGGAGGCTAATGCTGTGGAAGAAGACTGGGACGCTCAATTTAAATGCCCTGAAGACCCACGTTTTGATGTTTTTTCAGCATCATCAGCTGGGGGGTGTGCCAAAACTAAAAATGAAAATCCCCAACTTGGGGTGGGGTTCTCTGCTTCTTGTGATGGGATTTCTCCAATAAAACAGCTGGCAAAGGCTCCAGAACCAACATATGGAAAAACAATTCCCCACCAGAATGTCACTTTCAGGGGAAAAGATTTGCATCAATTCCAAACCTACAGTCCAGTTTCGGTTTTTGAAAGCAGCAGTTCTTCCTCAGTTGAGAATTCCAACTTCGATCGACCTGTCATCCGAGTAAAGCGAGTTCGAAGCAAACGTCAGCGTCCTTCAAGCTTCAGTCCTCTGTTTTCAACTCCTTTCTACCTTAATTTACCAGCTTTGCGAAAACATCAAGGGACAACTGCCTCTGAATCAGATTTCGGAACAAATGTTGCTGGGAATCTATCAAACAAACTAAAAAGGCAAAGGAAAAAGGATTTGACCCCGCTACCAGATGATGTTGAGATGATGAGATCCTCATCACTTGAGCCGGCTGCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGCGTTCGGTACAGGTCTGGCCGCCTCTTTCCCGAATACCGGCCTGCAGCAAGCCCCACTTTTGTAGCATCATTGCACTCGAACTGTCACAAGAAGGTAGTGGAGATGAGAACCCGGTTCAGGGGTTCTTCCATGTTGGCTCCATCAAATCTCCATGGAAATTCTGTAGGATAA 966 0.4545 MSEDSANMKDSWFFDNNFNGLSDEIFDDVVNFFDFPLEDVEANAVEEDWDAQFKCPEDPRFDVFSASSAGGCAKTKNENPQLGVGFSASCDGISPIKQLAKAPEPTYGKTIPHQNVTFRGKDLHQFQTYSPVSVFESSSSSSVENSNFDRPVIRVKRVRSKRQRPSSFSPLFSTPFYLNLPALRKHQGTTASESDFGTNVAGNLSNKLKRQRKKDLTPLPDDVEMMRSSSLEPAAPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRTRFRGSSMLAPSNLHGNSVG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00523 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 294 - -
Cca10g00523 321 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Cca10g00523 321 MobiDBLite consensus disorder prediction 189 221 - -
Cca10g00523 321 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
Cca10g00523 321 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Cca10g00523 321 MobiDBLite consensus disorder prediction 189 206 - -
Cca10g00523 321 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cca10g00523 321 PANTHER GATA TRANSCRIPTION FACTOR 26 303 - -
Cca10g00523 321 Gene3D - 231 305 IPR013088 GO:0006355|GO:0008270
Cca10g00523 321 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Cca10g00523 321 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 26 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00523 Cca-Chr10 5524519 5529365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00523 15 303 C2C2-Gata Transcription Factor Family AT1G08010 38.264 2.68e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca10g00523 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00523 - - gmx:100778675 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00523 10 5524519 5529365 Cca10g00523 10 5524519 5529365 ECH