Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00522 ATGAAGGAAACAGACAAGACGTTGGATCCGCAGCTGTGGCACGCCTGCGCCGGCGCCATGGTTCAGATGCCGCCAGTCAACTCCAAAGTATTTTACTTTCCGCAGGGGCACGCCGAACACGCGCACTCCAACGTCGATTTCACTTCCTCGCCGCTTCGGGTTCCGCCGCTTATTCTCTGCCGCGTGGCCGCGGTCACCTTCCTCGCCGACCCCGACACCGACGAGGTCTTCGCGCGCCTCAGGCTCCTGCCGCTCCGGAGCACGGACCTcgacgccgacgccgacgacaacgacgccgCCTCGGAGGCTTCGGAGAAGCCGGCGTCGTTCGCGAAGACGCTGACGCAGTCGGACGCGAACAATGGCGGAGGGTTCTCCGTGCCGCGGTACTGCGCGGAGACGATATTCCCACGGCTGGACTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTAGGCACCTTTTGACGACGGGTTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCGGGGGACTCCATCGTGTTTCTGCGAGCGGATAATGGTGATCTCTGCGTGGGGATTCGTCGGGCGAAGAGAGGTGGGGTTGGTGGGCCTGAGGTGGGGAGTGGTTGGAGCGGCGGCGGCGGTGGTGGGCTTGGGCCTTATGGGGCCTTTTGTGCATTCCTTAGAGAGGAGAGCAAAGGGGCGAGGAATGGGAGTGGGAGGCCCAAAGTGAGTGCTGAGTCTGTGAGAGAGGCTATTATGTTGGCTGCTGGGAATCAAGCTTTTGAGGTTGTTTATTACCCTCGTGCCAGTACTCCTGAGTTTTGTATTCGCACTTCCGCTGTGAGAGCGGCTTTGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGATTCTTCCCGGATTAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGCTTCTTGATCCCATTCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTTACTTGGGACGAGCCAGATTTGCTGCATAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCCAACGTGCCGATCATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAGCACCCAGAGTTTCCCCTTGACGTTCAATTTCCAATACCAACGTTTTCAGGCAACCCCCTTGGGTCTAGCGCTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACCTTAACCATAAGCAGCTGCAGTTGGGTTTCCTTCCAACGAACTTTCGCCAGCTTGATTTGCACACTGGGATTTCTAATGGAAACATCACCAACCATGGTAAGAGTAGAGAAAGTCTATCATGCTTGCTGACCATGGGAAATTCAAACAAGAGTTTGGAGAAATCTGATCATGTGAAGAGACACCAATTTTTGCTTTTTGGTCAACCGATACTCACCGAGCAACAAATTGCTAGAAAGTCTTCTAGTGATGTGTTGTCTCAAAATTGTACCGCCACGGATGATGAGAATAAGGAGAAGGGGTTTCTTAGTGACTCCCAGTCTTCAGTTTCACCGGGAAAGTCGTCTTCCACTGCCGAATTCTCTTGGCAACTCGGTTCGGACACCAGCAGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTAGGACGGACCCTTGATTTGTCCTGTCTTGGTTCTTATGAAGAATTGTACATGAGACTGGCCAACATGTTTGGAATACAACGGTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTTAAGCAAACCGGAGAAGAGCCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAGCAAAGATAGAAGGTGCGAGTGCGAGAAAAAAAAATGA 2022 0.5208 MKETDKTLDPQLWHACAGAMVQMPPVNSKVFYFPQGHAEHAHSNVDFTSSPLRVPPLILCRVAAVTFLADPDTDEVFARLRLLPLRSTDLDADADDNDAASEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRADNGDLCVGIRRAKRGGVGGPEVGSGWSGGGGGGLGPYGAFCAFLREESKGARNGSGRPKVSAESVREAIMLAAGNQAFEVVYYPRASTPEFCIRTSAVRAALRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQLLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPLGSSASSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNLNHKQLQLGFLPTNFRQLDLHTGISNGNITNHGKSRESLSCLLTMGNSNKSLEKSDHVKRHQFLLFGQPILTEQQIARKSSSDVLSQNCTATDDENKEKGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSSHCKVFMESEDVGRTLDLSCLGSYEELYMRLANMFGIQRSEMLSHVLYRDATGALKQTGEEPFSEFMKTAKRLTILTDSSSKDRRCECEKKK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00522 673 Gene3D - 577 664 - -
Cca10g00522 673 CDD B3_DNA 109 210 IPR003340 GO:0003677
Cca10g00522 673 Gene3D - 108 212 IPR015300 -
Cca10g00522 673 Gene3D - 305 377 - -
Cca10g00522 673 PANTHER AUXIN RESPONSE FACTOR 2 664 - -
Cca10g00522 673 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
Cca10g00522 673 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Cca10g00522 673 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca10g00522 673 SMART B3_2 110 212 IPR003340 GO:0003677
Cca10g00522 673 SUPERFAMILY DNA-binding pseudobarrel domain 104 211 IPR015300 -
Cca10g00522 673 MobiDBLite consensus disorder prediction 91 115 - -
Cca10g00522 673 MobiDBLite consensus disorder prediction 546 566 - -
Cca10g00522 673 Pfam Auxin response factor 269 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca10g00522 673 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00522 Cca-Chr10 5513342 5516518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00522 4 663 B3 DNA Binding Superfamily AT4G30080 58.519 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca10g00522 B3 5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00522 - - gmx:100778135 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00522 10 5513342 5516518 Cca10g00522 10 5513342 5516518 ECH
Cca10g00522 10 5513342 5516518 Cca04g00798 04 7953764 7957517 ECH
Cca02g00830 02 23157769 23161881 Cca10g00522 10 5513342 5516518 ECH
Cca03g02374 03 44732480 44736520 Cca10g00522 10 5513342 5516518 ECH
Cca10g00522 10 5513342 5516518 Cca04g00798 04 7953764 7957517 PCT