Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00517 ATGGCGAAAGACGTTGAGCAAGTGACGGAGCAAGGTGGCGAGTACTCGGCCAAGGACTACACGGACCCACCTCCGGCGCCCTTGATCGACCCCGAGGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAGTTCATAGCCACCCTCCTCTTCCTCTACATCACCGTCTTGACCATCATTGGCTACAAGAGACAGACCGACACCAACATTCCCGGCAACACGGAATGCGACGGCGTCGGCATTCTGGGCATCGCTTGGGCCTTCGGCGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGCATCTCTGGGGGACACATCAACCCTGCGGTGACGTTCGGGTTGTTCTTGGGACGCAAGGTGTCGCTTGTGAGGGCGTTGTTGTACATAATAGCGCAGTGCGCCGGTGCTATCAGCGGTGCTGGGTTGGCGAAGGGGTTCCAGAAATCCTACTACAACAGGTACGGAGGTGGGGTTAACCTCGTCAGCGATGGCTACAACAAAGGAACCGCCTTGGGTGCCGAAATCATTGGTACCTTCGTTCTTGTCTACACTGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCAACAATCCCTGTCACGGGTACCGGAATTAACCCCGCAAGGAGTTTCGGTCCAGCTGTCATCTTCAACGAGGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTATTGGAGCTGCCGTGGCTGCATTCTACCACCAATATATTCTTAGAGCTGCAGCGATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAG 867 0.5502 MAKDVEQVTEQGGEYSAKDYTDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDTNIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYIIAQCAGAISGAGLAKGFQKSYYNRYGGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNEDKAWDDQWIYWVGPFIGAAVAAFYHQYILRAAAIKALGSFRSNA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00517 288 Gene3D Glycerol uptake facilitator protein. 26 288 IPR023271 -
Cca10g00517 288 PANTHER AQUAPORIN PIP2-7 1 288 - -
Cca10g00517 288 MobiDBLite consensus disorder prediction 1 25 - -
Cca10g00517 288 CDD MIP 41 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Cca10g00517 288 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 Pfam Major intrinsic protein 33 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 TIGRFAM MIP: MIP family channel proteins 45 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00517 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Cca10g00517 288 SUPERFAMILY Aquaporin-like 32 274 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00517 Cca-Chr10 5420700 5422776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00517 1 288 Major Intrinsic Protein MIP AT2G37170 77.509 1.58e-165 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00517 K09872 - gmx:732604 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00517 10 5420700 5422776 Cca10g00517 10 5420700 5422776 ECH
Cca10g00517 10 5420700 5422776 Cca04g00788 04 7823730 7826104 ECH
Cca03g02372 03 44699760 44701228 Cca10g00517 10 5420700 5422776 ECH
Cca10g00517 10 5420700 5422776 Cca04g00788 04 7823730 7826104 PCT