Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00516 ATGTTTACAATGCGATTGCTATGGGGGCTAAGGCTGCCCCTGCTCATACTGATTCAACTTTTGTGCCCCAACAAATCAAGCTACGAGTTACATGCTGAGGCTTTGTTCACTTTCAAGGATTCACTTCGTGGTCCACGTCAATTTAGATGCAGCATTGTGAAATATCCATGCCAAATGCAATGGCCTTGTCTTGACTGCTACAAACCAAAAGATCCAGGTGGAATAACAGCAAAGATAGATGGGAATAATGACATTCCAACATTTACACCTCTTCGAGAAACTCAAGTTAGAAAACCAGGAGGAACAAGGAATGCTGCCATAGTTGGTAGTGTTGCTGCTGCCTTAATCATCATTGCTACTATGATTATTGTCTTTATCTGCCTGATGCGTGTTAAAAGATTTATGAGGCAAGCATCTGATGTTGCTTCTTCTATGCCCTCTCCCACATTTGAGATGGGAAGAGTCAACAACACGCTGCATGTTAATGATTTCTCTCCACATCATACGCAGAACACAAGGCAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCAAAGTAATATTATAGGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCTATTGTGGCCATAAAAAGACGTCTATTTGCTCTAACACGGGATTTCGTCCTTGAGGTAAAGCAGATAGCTCATATTCATCACATCCATCTTGTCAAACTTATAGGCTATTATGAAGACAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAACGTAGGGTGTCACCTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGAGGCGAAGGTTATCTATTGCTTTAGGCGCGTCCAAAGGAGTGGAACATCTTCACAGTTTGGTCCCTCCTTCGGTTCACACCAATTTTAGAACTAGCAATGTTTTGTTAGATGAAAATTATACGGCCAAGGTTTCCGATTATGGATTCAGCAAATTGAAAACAAAAGTTGATCAGGCTGGCTCATCTTCAAATATAGACTGCTTTCTCGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTATACAGTTTCGGGGTCTTCTTACTAGAGTTGCTTAGTGGTTGTGAAGCACATAACAAAAACATGACGAGCCCAGATGAAAATATAGTATTTCAGGCAAAAAATAGCGTTGAGTTGGAGAACTTTGTTGACATAACGCTGGGAGAGGAAGAAAAGCATGGTGCAAGACGAATGATGAAGATGGCATTGTTATGTGTGGATATCACTTCTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGCTGGAGCGGATTGAAAGAGAAATTGCTCCGATGTATTCTCAATTCAACGACGAGATTGGTGCCGTCACTCTTGGGAGTGAACTTTTTCAATAA 1434 0.4086 MFTMRLLWGLRLPLLILIQLLCPNKSSYELHAEALFTFKDSLRGPRQFRCSIVKYPCQMQWPCLDCYKPKDPGGITAKIDGNNDIPTFTPLRETQVRKPGGTRNAAIVGSVAAALIIIATMIIVFICLMRVKRFMRQASDVASSMPSPTFEMGRVNNTLHVNDFSPHHTQNTRQLTILELEQATRNFSQSNIIGEGGFGFVYKGLLQDGSIVAIKRRLFALTRDFVLEVKQIAHIHHIHLVKLIGYYEDSYQQLLVYEYLPNGNVGCHLYDSEGLPIGRLDLRRRLSIALGASKGVEHLHSLVPPSVHTNFRTSNVLLDENYTAKVSDYGFSKLKTKVDQAGSSSNIDCFLDPELSFPQNYSEKSDVYSFGVFLLELLSGCEAHNKNMTSPDENIVFQAKNSVELENFVDITLGEEEKHGARRMMKMALLCVDITSRRPSMAQIVQELERIEREIAPMYSQFNDEIGAVTLGSELFQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00516 477 Gene3D Transferase(Phosphotransferase) domain 1 260 469 - -
Cca10g00516 477 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 74 475 - -
Cca10g00516 477 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 74 475 - -
Cca10g00516 477 Pfam Protein tyrosine and serine/threonine kinase 190 448 IPR001245 GO:0004672|GO:0006468
Cca10g00516 477 Gene3D Phosphorylase Kinase; domain 1 158 259 - -
Cca10g00516 477 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00516 477 SUPERFAMILY Protein kinase-like (PK-like) 166 456 IPR011009 -
Cca10g00516 477 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00516 Cca-Chr10 5393237 5397970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00516 94 455 Receptor kinase-like Gene Family AT4G02010 36.745 6.71e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Cca10g00516 PK_Tyr_Ser-Thr 3.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00516 - - gmx:100780443 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00516 10 5393237 5397970 Cca10g00516 10 5393237 5397970 ECH