Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00512 ATGATTATGTTATTATTTACTAGAGCCAAGCTGGATAATAATGAAAAATTAGGGGATTTTACTCATAAGTTGGAAGCTGCATGTGTTGCATGTGTTGAGACAGTGGAGTCAGAAAAGATGACTAAAGATCTTGCAATTCTATTTCATGGACCAAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCCAGGGAAAACTTGCACCACTTGGGTCAGTTTTTAGCTGGTAAACGTGCTGATGCTCCACAGGAAGCACTCCAGATTCTTGACATTGTATTGAGAGAGCTATCATCTAAGAGGTTTTGTCCAATCGGGAGATCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGTTTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGTTGCATTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGGCGAGGCAATTGTCTGATGCTGATCGCATTAAAATTAAGAAAGCCCTCAGAGGAGTTAAATTTGAAGTTACCCACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCTGGTTTGACTTCTCAGCCAACCAGAGAACTCATGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAAGCAAATTATTTACGTATGGAGGTAGGGAAAATTCCTGCGAATTGA 819 0.3993 MIMLLFTRAKLDNNEKLGDFTHKLEAACVACVETVESEKMTKDLAILFHGPKREREYRVVIKFVARENLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASVAFIEPLPVVEYVGQLLGKDILARQLSDADRIKIKKALRGVKFEVTHRGSVRRKYRVSGLTSQPTRELMFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLRMEVGKIPAN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00512 272 Gene3D paz domain 151 272 - -
Cca10g00512 272 Gene3D Isopropylmalate Dehydrogenase 1 71 - -
Cca10g00512 272 PANTHER PROTEIN ARGONAUTE 10 46 269 - -
Cca10g00512 272 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 46 269 - -
Cca10g00512 272 Pfam PAZ domain 183 270 IPR003100 GO:0005515
Cca10g00512 272 ProSiteProfiles PAZ domain profile. 157 271 IPR003100 GO:0005515
Cca10g00512 272 Pfam N-terminal domain of argonaute 5 95 IPR032474 -
Cca10g00512 272 Pfam Argonaute linker 1 domain 105 154 IPR014811 -
Cca10g00512 272 CDD PAZ_argonaute_like 156 269 - -
Cca10g00512 272 SUPERFAMILY PAZ domain 75 267 IPR036085 GO:0005515
Cca10g00512 272 SMART DUF1785_2 104 156 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00512 Cca-Chr10 5346615 5348163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00512 47 269 Eukaryotic Initiation Factors Gene Family AT5G43810 82.960 8.57e-136 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00512 K11593 - ccaj:109819045 521.161