LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00511	ATGAGTGGTGAGCAAAAAGAAAAACACGACACACCTTCCTCCAAACCAACCGTTTCTCCTCCACTTCACAAGGTGCGTGATCCAATGGATGAAACTGAAGGTTCGCGTGTTAAAACTGATAGTCATTGGAAGAGACAGAATCTTGAGCTGGAAATACCCCGAGAGTCTTCTTCTCAGGATTTTGTTCCGATAAGGTTGCCACTCACACCAAGTCCAACTCCTAGTCATAAAAAAGTGAACTTTCTCGTGACTTCTCGCTCTGTTGATGCTCCAAGGCCTTCATCATACAGAGGCAAATCTTCCATGAGAAGCATATTACCAAAATTGGGGTTCAGGAATCGGCCATCGCTTGATGACAAGTCTTCAATTTCGAGATCAGTGTCCCTCACCAAGATATTCAATCCTCTCATTAAGAGAACTTCATCGTTACCTGTGGAAGAAATTGCGCGTGCAAACGCAGAATCTGCTCTTGCTACTTCTCCATGTAGAAGAGAGATCCAGGGGATGATTGCTCGTTCTCGTTCAGTGCCTGTCAATAACAACGAAAAAGGCATAAGGAAATTGGATTCAGTTTTCCGCATTATTCCTTCAACCCCTCGCGTAAATGAAGTGAATGAAACAACAAAGAATACTGAAAATGGTGACGGTGAAGACATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCGGTCACTCTCTTGCGGATACGAAGTGTTCAAACTCAGAATACTGGAGCAACTTCCGAGCATGGAGATGAATACAGGCATGTGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAGCATGCTAGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAGGCAATTTTCATCTCTCTTCCATTTTCTTGTGTCCTGGGCCTACTCTCCTCCGTGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTGTCCAATTTGTGTTGGTGGTCTTATTCGGCCATGTATTCTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCAACATTTGCTGGATTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGGTGGCAAGCTTTATCAGAGCAGCAGCATGGTTCTCTAGATGGGATAACAATTCAGAGCTGA	1335	0.4457	MSGEQKEKHDTPSSKPTVSPPLHKVRDPMDETEGSRVKTDSHWKRQNLELEIPRESSSQDFVPIRLPLTPSPTPSHKKVNFLVTSRSVDAPRPSSYRGKSSMRSILPKLGFRNRPSLDDKSSISRSVSLTKIFNPLIKRTSSLPVEEIARANAESALATSPCRREIQGMIARSRSVPVNNNEKGIRKLDSVFRIIPSTPRVNEVNETTKNTENGDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGATSEHGDEYRHVAWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLLSSVTSSTMVKSRFIWIYASVQFVLVVLFGHVFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWQALSEQQHGSLDGITIQS	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g00511	444	MobiDBLite	consensus disorder prediction	1	56	-	-
	Cca10g00511	444	CDD	RING_CH-C4HC3_MARCH	226	274	-	-
	Cca10g00511	444	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	32	434	-	-
	Cca10g00511	444	SUPERFAMILY	RING/U-box	222	277	-	-
	Cca10g00511	444	MobiDBLite	consensus disorder prediction	24	51	-	-
	Cca10g00511	444	Pfam	RING-variant domain	226	273	IPR011016	GO:0008270
	Cca10g00511	444	SMART	ringv_2	225	274	IPR011016	GO:0008270
	Cca10g00511	444	ProSiteProfiles	Zinc finger RING-CH-type profile.	218	280	IPR011016	GO:0008270
	Cca10g00511	444	PANTHER	OS02G0165000 PROTEIN	32	434	-	-
	Cca10g00511	444	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	211	281	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00511	Cca-Chr10	5337386	5340927	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00511	215	280	C3H Transcription Factor Family	AT2G37950	44.776	3.28e-13	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00511	-		-	gmx:100782610	657.521

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g00511	10	5337386	5340927	Cca10g00511	10	5337386	5340927	ECH
	Cca10g00511	10	5337386	5340927	Cca04g00783	04	7779445	7794745	PCT