Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00510 ATGGGTAATATTGGAAGCATGAGGAGGAGGAGGCACCACCCCACTTcacaaccacaaccacaaccacaaccacaaGGAACAAACACAAACACAAACTACTACTCCTTTGCACCACCTCCTCCTAACTACCCCAACACACTTCTTCCTCCCTATCACCACTACCCTCAATCCTTTCCACCACCTTCCCTTCTCCATCACAAAGCTATCACCATTAGGAATGATGTCAATATCAAGAAGGACACTCTTCGCATCCACCCTGATCATCACAATCCTCACCATTTTCTTCTCACTTTCACCTTTGATGCCACTGCTCCTGGATGTATTACAGTGATGTTTTTTGCCAAGGAAACTTTAGATGGTAAGCTGATAGCTGTAGAGAAAAGCTTGGTGAATCAGATCTCAATGCCTTTTCAGCAAGGTCTTTGTCAGAAGTTCAGACAACCTTCTGGAACTGGCATTGAAATGTCGATGTTAGAGGAGACAGGACTAACCAAAGAAGGTGATGCAGAAGTTTATCCTCTTGTGCTCAAGGCTGAGGCTCGACCGTTAAACCGTTATGAAAATGAGGGAAACGTGTCTTCTCAAATTACTTTGGCTAGTTTTGAGAAGAGACAAAGAGGTGAGTACAAGGTCCAAGTGGTGAAACAGGTTCTCTGGGTCAACGGGAAAAGGTATGAACTGCAGGAGATATATGGCAATGGGAATGTTAGTGATGGTGATGGCCATGAATCTGGTGGAGATTGCGTGATTTGTTTGTCAGAACCACGAGACATAACTGTGCTTCCTTGCCGACACATGTGCATGTGTAGTGGCTGTGCCAATCTTCTGAAAGTTCATACAGCCAACTGTCCCATCTGTCGGCATCCAGTTGAGAGGCTTTTGGAAATTGAAGTTAAGTAA 900 0.4322 MGNIGSMRRRRHHPTSQPQPQPQPQGTNTNTNYYSFAPPPPNYPNTLLPPYHHYPQSFPPPSLLHHKAITIRNDVNIKKDTLRIHPDHHNPHHFLLTFTFDATAPGCITVMFFAKETLDGKLIAVEKSLVNQISMPFQQGLCQKFRQPSGTGIEMSMLEETGLTKEGDAEVYPLVLKAEARPLNRYENEGNVSSQITLASFEKRQRGEYKVQVVKQVLWVNGKRYELQEIYGNGNVSDGDGHESGGDCVICLSEPRDITVLPCRHMCMCSGCANLLKVHTANCPICRHPVERLLEIEVK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00510 299 PANTHER MAHOGUNIN 1 299 IPR045194 GO:0061630
Cca10g00510 299 ProSiteProfiles Zinc finger RING-type profile. 248 287 IPR001841 -
Cca10g00510 299 Pfam Zinc finger, C3HC4 type (RING finger) 247 292 - -
Cca10g00510 299 MobiDBLite consensus disorder prediction 1 15 - -
Cca10g00510 299 PANTHER - 1 299 - -
Cca10g00510 299 SMART ring_2 248 286 IPR001841 -
Cca10g00510 299 MobiDBLite consensus disorder prediction 22 36 - -
Cca10g00510 299 MobiDBLite consensus disorder prediction 1 39 - -
Cca10g00510 299 SUPERFAMILY RING/U-box 247 292 - -
Cca10g00510 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 296 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00510 Cca-Chr10 5321412 5323388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00510 50 267 C3H Transcription Factor Family AT3G09770 52.402 1.37e-75 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00510 - - gmx:100816136 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00510 10 5321412 5323388 Cca10g00510 10 5321412 5323388 ECH