Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00508 ATGGGAGATTATAAGGGGTTTTCAATTTCCAAAATGATTGCCTGCTGTGGTTGCTTTGGATTCGTCAAAAAACCAAGACGAGGACGGTCTAGACGTAGCATCAACAATTTTGTCTCCCAGGAGCTATTATTGGATGGAGAAACTGAAGGTGATGAGACGTGTAGTGGTGATGTTACTAGTAACGCCACCAGTGATGATAATGAGCTGCATGCTGTACGCAACCGTTCGGAGGAGATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCCTTTCCTGTTAAGGAGACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGCTCTGGAAGCTATGGCAAAGTGGCTCTCTATCAAAGTTGTGTTGACGGAAAGCCTTATGCAATTAAGTCCTTTCACAAGTCTCATTTACAAAAGCTTCGTGTTGCACCATCTGAAACTGCCATGACTGATGTTCTGCGTGAGGTACTGATTATGAAAATGGTAGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTTTGTGAGGGTACAGGTCGTCGTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACATGCGTGACATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACAGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCAGACACGTGGGCTGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATATCCATTTCTTGGAGACACTCTTCAAGACACATATGATAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAACCCCCTGTTAAAGAACTTAATAGAAGGATTACTTTGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTCCCGAGTACTTATGTTGGTGCAAACGCAAGAGCCTGAGAGAGGGAGTCTCCTTGGAATTCAAGACGATACGGCTCATGCTGCCGAGGATAAGTTGTCAACTAAGTCATGTTTATTTTAATGTTACTTGTGAAGCATTAGAGGTCTTGTATACGGCTCTTTCTCATGGAACGAGTTTTTCTCTCAAACACGTGCCCGATGGATTCTTGCCAAACCTCTCGGCGGAGCAACTGGCTTTAGATGAGAAGTGA 1401 0.4233 MGDYKGFSISKMIACCGCFGFVKKPRRGRSRRSINNFVSQELLLDGETEGDETCSGDVTSNATSDDNELHAVRNRSEEILNFRAENGMVCRPFPVKETCKLVRSEDENGNKMINEYVREYKIGSGSYGKVALYQSCVDGKPYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRRCALGEETARKYMRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPLLKNLIEGLLCKDPELRMTLGDVAEHVWVIGNDGPIPEYLCWCKRKSLREGVSLEFKTIRLMLPRISCQLSHVYFNVTCEALEVLYTALSHGTSFSLKHVPDGFLPNLSAEQLALDEK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00508 466 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 9 397 - -
Cca10g00508 466 SMART serkin_6 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00508 466 Gene3D Phosphorylase Kinase; domain 1 110 213 - -
Cca10g00508 466 ProSiteProfiles Protein kinase domain profile. 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00508 466 SUPERFAMILY Protein kinase-like (PK-like) 112 426 IPR011009 -
Cca10g00508 466 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 9 397 - -
Cca10g00508 466 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Cca10g00508 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Cca10g00508 466 MobiDBLite consensus disorder prediction 48 68 - -
Cca10g00508 466 MobiDBLite consensus disorder prediction 53 67 - -
Cca10g00508 466 CDD STKc_LKB1_CaMKK 122 377 - -
Cca10g00508 466 Pfam Protein kinase domain 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00508 466 Gene3D Transferase(Phosphotransferase) domain 1 214 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00508 Cca-Chr10 5291685 5296316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00508 111 384 CBL-interacting serine-threonine protein kinases AT5G35410 32.482 4.83e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Cca10g00508 Pkinase 4.6e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00508 K00908 - gmx:100776013 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00508 10 5291685 5296316 Cca10g00508 10 5291685 5296316 ECH