Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00503 ATGATGTCTCAACAAGCAGCTTCGGTTCCTTCCAACCTTAGACCCTCCTCGGTTCAACTTCACCAACCAAACTCAAACCCTAATCCTAACCCTAGTTCAGCTTCATCAGCTAAGAGAAAAAGAAGCCTTCCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCACTGATGGCGACGAACAGATTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAACTTGCCGTGGAAGCTGCGGCAGAGAGCGAAGGAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGTTGCGTGCACCACGACCCTTGCAGAGCCCTCGGAGACCTCACTGGTATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGCGCTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAGGCACATAACAAGATTTGCGGTACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGTTTCGTAACGCATAGAGCGTTTTGTGACGCCATGGCGGAACAAGCGGCGAGAGTGACATCACTTCCGGCGGTTTTATCAAACGAGATTTTGATGAACGCTCAGGGATTGCAGTATTCTGAATTTGGTGGGCCAGGCCCAGAAGCATTCATGGGGAATTTGGCGGATGCGGCCCATCATCATGAGCATAAGCTGAAGCTTCCACTATGGCTAGACCAGGCCAACCCTCACGCTCTTAGCGTTGGAAGCAACTCGAGTACTGTGTTCTCACCGGGAACAACAACAACCTTCCCTGAAACAAATAACATGTTTGGTACACCACAGTGGTTGAATTACCGATACCCAGAAGCATCCTTTAATGGTGCGAATAATGTTTCTGTGGCTCAACCTCAAGGAGTAATGAAGCTCGAGCAAGAAGAAAACAAGGGGGAATTGTCGCATAGCGTGAGCTCTTTGTTCCCATTCAGTCACATGGAATCTACAAGGATGAGTGGTAATGGTAGTTCAGCGTTCGACAACTCCAACACTGTTTTTGGCTTGTTGGACCCGAACAACAACCGAGGTAATAATGTGGTTGACATTCAGAAAATGTTGTTCAAGCAAGCACACGAGGGTGTGAACTTAAACCACATGGTGAATTCCCTCGCAAGCAACAACATGAACATGGTGATGCCGCGGATTGAAGAAATAATGGAGAAGCAGCTACCCTATTCAAGTTCTTCCAATACTGAAGATCAGCACTTAACCAAAGACTTCATGGGTGTTGGAGATGGATCGATGATGGGACCAATGGTGAACCTGCAAAGCAAGTTCCGTGGACATTATTGA 1377 0.4808 MMSQQAASVPSNLRPSSVQLHQPNSNPNPNPSSASSAKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRAKEEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWRCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQAARVTSLPAVLSNEILMNAQGLQYSEFGGPGPEAFMGNLADAAHHHEHKLKLPLWLDQANPHALSVGSNSSTVFSPGTTTTFPETNNMFGTPQWLNYRYPEASFNGANNVSVAQPQGVMKLEQEENKGELSHSVSSLFPFSHMESTRMSGNGSSAFDNSNTVFGLLDPNNNRGNNVVDIQKMLFKQAHEGVNLNHMVNSLASNNMNMVMPRIEEIMEKQLPYSSSSNTEDQHLTKDFMGVGDGSMMGPMVNLQSKFRGHY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00503 458 MobiDBLite consensus disorder prediction 1 40 - -
Cca10g00503 458 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Cca10g00503 458 SMART c2h2final6 67 89 IPR013087 -
Cca10g00503 458 SMART c2h2final6 109 139 IPR013087 -
Cca10g00503 458 SMART c2h2final6 144 164 IPR013087 -
Cca10g00503 458 Gene3D Classic Zinc Finger 45 119 - -
Cca10g00503 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Cca10g00503 458 MobiDBLite consensus disorder prediction 1 52 - -
Cca10g00503 458 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Cca10g00503 458 Gene3D Classic Zinc Finger 120 202 - -
Cca10g00503 458 ProSiteProfiles IQ motif profile. 443 458 IPR000048 GO:0005515
Cca10g00503 458 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 443 - -
Cca10g00503 458 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Cca10g00503 458 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 19 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00503 Cca-Chr10 5247483 5249118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00503 37 213 IDZ Gene Family AT3G45260 79.444 2.35e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00503 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00503 K25870 - gmx:100811687 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00503 10 5247483 5249118 Cca10g00503 10 5247483 5249118 ECH
Cca10g00503 10 5247483 5249118 Cca04g00756 04 7599492 7602123 PCT