Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00501 ATGGAGGGAGATCAACAAGGCTCTCATTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCTATCATAGCTGAAATAGATCTCTATAAGTATAACCCGTGGGAGCTACCTAATAAGTCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGCCCGAGAGACAGAAAGTACCCAAATGGGTTGAGGCCAAACAGGGCAGCAGCCTCAGGATACTGGAAAGCAACTGGAACTGACAAGCCAATTCTTTCTTCAAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATAATGAATGAATATAGATTGATTGACACAGCCACTTCATCCTCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTATTATGCCGGGTTCGACATAAAGGCTACTCTTTGAAGAATTCATGTGAAAATCAAGAGAATCCTAGTGAACTAAACTTGCCGGCAAAACTAGCAAGCAGTGAAGAGTACCCAACAAACATGAACGGTCGGGTTGACATGATCACTGATTATCAATTCAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGACCAATACCTCCCACTGAAAACATGCCAAATCTGAGCCTTAAGGGCTGCAAAAGCAACAATCTATTTTCAGTTTATGAAGATGGTTCCTCTAAAGTGAATTCTCAAACGACAATTCCTTCTTTCGACAGTTATTTCAACCCTCTCACAAGAAAATCTAATGAAGATGAACAGTATGGAAATCTCATTTCTTTTAAGGACGCATCTCCTAGCAAGGTGTTGAACCGTAGAGAATTGAACTGCTACAACCAAAGCCAGTCTCAAGATGACATTTTCAATGGGAACGCACCAGATCCTAGCATCAATTTTCAAGAGCTAAACGAATTAGCCTTCACAGGCAGGTACCCTCAGTGA 1023 0.4223 MEGDQQGSHYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTATSSSRLKGSMRLDDWVLCRVRHKGYSLKNSCENQENPSELNLPAKLASSEEYPTNMNGRVDMITDYQFKDYQIIASILVGGPIPPTENMPNLSLKGCKSNNLFSVYEDGSSKVNSQTTIPSFDSYFNPLTRKSNEDEQYGNLISFKDASPSKVLNRRELNCYNQSQSQDDIFNGNAPDPSINFQELNELAFTGRYPQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00501 340 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Cca10g00501 340 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Cca10g00501 340 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Cca10g00501 340 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 303 - -
Cca10g00501 340 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Cca10g00501 340 PANTHER NAC TRANSCRIPTION FACTOR 56 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00501 Cca-Chr10 5233281 5235502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00501 8 166 NAC Transcription Factor Family AT1G69490 69.182 4.10e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g00501 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00501 - - ccaj:109819036 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00501 10 5233281 5235502 Cca10g00501 10 5233281 5235502 ECH