Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00500 ATGTCCGTCGTCGATATTCTCTTCCGCGTCGACACCATATGCCACAAATATGAAAAGTACGACATCGACAAGCAGCGCGAGCTCAATGCCTATGGCGACGACATCTTCGCTCGCCTCTATGCCGCCGTCGAAAACGCCATTCAAACCGCTCTCAATGTTCCcttctttcccctcttctcttcagtttccgttgcttttcttcttcttcttcttcACATTCACGTTCGTCGAACCAAGGGTAGACTCATGGATGAAATTCCTAAACTCCGCAAATTGGCCAATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATCGCCGTTCGTCAGGATCTTGTTTTGGCATTGCCCGAGAGAATTGAAGCGATACCGGATGGGATTACTGGTATTCAAACTGCAGGATGGAGCTCTAACTCGTCTCAGCCGCAAATCAAGTTTGATTCAGAGGGACAGCTTGACAGTGACTATTTTCAACAAAGTGAAGAATCCAGTCAGTTTAGACAAGAATATGAGATGCGCAGGATGAAACAGGATGAAGGGCTTGATATCATATCAGAGGGATTGGATACTTTGAAGAATTTGGCGAGTGATATGAATGAGGAATTGGATCGGCAAGTTCCTTTAATGGATGAAATTGATGCAAAGGTGGATAGGGCAGCGGCCGATGTAAGAAACACTAACGTAAGGCTGAAGAAAACACTCACCGAGATAAGGTCTAGTCGAAATTTCTGCATTGACATCATTCTGCTATGTGTTCTTCTTGGAATCGTTATGTATTTATACAATGCTCTGAAGTGA 795 0.4138 MSVVDILFRVDTICHKYEKYDIDKQRELNAYGDDIFARLYAAVENAIQTALNVPFFPLFSSVSVAFLLLLLHIHVRRTKGRLMDEIPKLRKLANKKVKGLTKEDIAVRQDLVLALPERIEAIPDGITGIQTAGWSSNSSQPQIKFDSEGQLDSDYFQQSEESSQFRQEYEMRRMKQDEGLDIISEGLDTLKNLASDMNEELDRQVPLMDEIDAKVDRAAADVRNTNVRLKKTLTEIRSSRNFCIDIILLCVLLGIVMYLYNALK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00500 264 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cca10g00500 264 CDD SNARE_Qc 175 231 - -
Cca10g00500 264 SMART tSNARE_6 165 232 IPR000727 -
Cca10g00500 264 Gene3D - 170 231 - -
Cca10g00500 264 Pfam SNARE domain 207 256 IPR000727 -
Cca10g00500 264 SUPERFAMILY SNARE fusion complex 163 231 - -
Cca10g00500 264 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca10g00500 264 PANTHER SYNTAXIN 1 261 IPR045242 -
Cca10g00500 264 PANTHER SYNTAXIN-72 1 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00500 Cca-Chr10 5230589 5232734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00500 1 264 SNARE and Associated Proteins AT3G09740 64.179 3.97e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00500 K08506 - gmx:100817729 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00500 10 5230589 5232734 Cca10g00500 10 5230589 5232734 ECH