Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00497 atgCTCTCCAATGCCCCCTCCCGCATTCCCCTCCTCATTTCCCAAACCCTAAATTCAAACCCTCATGCATTCCAATTCGACGACGCAGACGTCACCGAGCACGAACTCCCCGCGCTCCACAATTCGGGGGTTAAGATTGCTGTTGGGAGTGAGGAGGCTATGGGCATTGTGCTACTGCCGTTGGCGGCGCGTGGGACTACCTCTGCCTTGTCAGGAAGCTCAAGTACAAGGGGAGTGCTTGAAATCTTGGGTTGTGTTCAGTTGGCAGGATTGTATTTGGAGGGGAAAGATCGTGAGGAATTGAGAGCAGATGAACAGGGAAATGAAACAACACCTGCCAAGTCAACACCTCACATGTTTTGCAAAACGCTTACAGCCTTAGACACCAGCACTCATGGGGGGTTCTCAGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAATGGAAATTTAGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATCTTTGTTAACCAAAAGAATCTCGTTTCTGGAGATGCAGTTCTGTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCGCGAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTGCCTTACCAAAAATATGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGACGAATCCCCAGAAAGAAGGTGTACCAGTGGTTTAGTGACTGGAATGAGTGATTTAGATCCCTACAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCGTCTCTCCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGCTGCCTCACCGAGTCACCTCATCACTGGTGTGGCAGTAGGAGGCAGTGGATTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACGAGTTTTATGTCATTATATTATGGATGTGACACGGGAACTAAGCAGCCAGAATTTGATATCAGATCTCCAACTCATTCTAATCTTGCATCAACTGGAGTGAGAAAGATTGCTGCTGCTGAGTTTATGAGGGTTCACCCTTCGACTTGTGCCAGCTTCAATGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTGACAGAAAAGGTTGATTTGAACTTTGGTGCTTGGGGCAAACCCAATGTCAATTGCACAAATTACAACCTGCATCAGGCAACCAAACCAAATTTTCACTCTTTAGGGCCAGAAGTTATTCAAACTGCGTATTACCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCAACATGTTGTACTCTAAACCCACCAATGTCCCATTTAACATTCCTTCCACTCAGCCAGGGATGATGAGAAATGAAGTTGGACGGTCAGATGTCACAATCCCAAATGAGCAAAAGCTGCAGGACAATATTCCTGGTGCTGCTAACATGAGGATTCCAAATGATGACAATTTGAAAGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCAGGGGAAACTACCACCCAAACTTTACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTGAGCGATGATAGCAACAGAGTTATATTGTGA 1923 0.4509 MLSNAPSRIPLLISQTLNSNPHAFQFDDADVTEHELPALHNSGVKIAVGSEEAMGIVLLPLAARGTTSALSGSSSTRGVLEILGCVQLAGLYLEGKDREELRADEQGNETTPAKSTPHMFCKTLTALDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQSYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCTSGLVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQAASPSHLITGVAVGGSGFMDSEESVRSSKVLQGQENTSFMSLYYGCDTGTKQPEFDIRSPTHSNLASTGVRKIAAAEFMRVHPSTCASFNETNRFPRVLQGQEICPFRSLTEKVDLNFGAWGKPNVNCTNYNLHQATKPNFHSLGPEVIQTAYYPYGDIHKAGQGSNMLYSKPTNVPFNIPSTQPGMMRNEVGRSDVTIPNEQKLQDNIPGAANMRIPNDDNLKGKVNACKLFGFPLSGETTTQTLQNSAKRSCTKVSDDSNRVIL 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00497 640 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cca10g00497 640 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 93 633 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca10g00497 640 Pfam Auxin response factor 246 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca10g00497 640 Gene3D - 118 222 IPR015300 -
Cca10g00497 640 SMART B3_2 120 222 IPR003340 GO:0003677
Cca10g00497 640 Gene3D - 284 356 - -
Cca10g00497 640 SUPERFAMILY DNA-binding pseudobarrel domain 111 232 IPR015300 -
Cca10g00497 640 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cca10g00497 640 PANTHER AUXIN RESPONSE FACTOR 93 633 - -
Cca10g00497 640 CDD B3_DNA 118 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00497 Cca-Chr10 5183392 5189030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00497 80 638 B3 DNA Binding Superfamily AT5G60450 53.684 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca10g00497 B3 4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00497 - - gmx:100812909 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00497 10 5183392 5189030 Cca10g00497 10 5183392 5189030 ECH
Cca10g00497 10 5183392 5189030 Cca04g00752 04 7529785 7536809 PCT