Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00496 ATGGATTTGGTAGCCAGTTGCAAGGAAAAATTGCAATATTTTCGTATAAAAGAGCTCAAAGAAGTGCTCACTCAGTTGGGACTTTCAAAACAGGGAAAGAAGCTGGATCTTGTTGATAGGATATTGTCTATTCTCTCAGATGAACAAGTTTACAAATCATGGGCCAAGAAGAATGCTGTTGGAAAAGAGCAGGTGGCAAAATTAGTGGATGACACATATAGAAAATTGCAAGTATCTGGGGCCATTGATCTAGCATCAAAGGGACAGGGTGCCTCGGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGATGATTCCTTTCAATCGGATACAAAGATTCGCTGTCTCTGTGGAAGTTTATTGGATACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGCCATGTGTCGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATAGATGGAATCCCACCAGTTCCTGATAAATTCTATTGTGAAATATGTCGACTTGATCGGGCAGACCCGTTTTGGGTTTCAGTGATGCACCTTCTGTTTCCGGTGAAGTTGACCACAACCTATGGCCCCACTGATGAAGGCAATATACAGAGTGTGGAAAAAACATTTCAACTTTCGAGAGCAAACAAGGAATTGGTATCAAAATCAGAATATGAAGTTCAGGCTTGGTGCATGCTTTTGAACGACAAGGTTTCATTCAGGATGCATTGGCCAAAATATGCAGATCTAAAGATCAATGGTCTTGCAGTTCGTGCAATTAACAGACCTGCTTCACAGTTGCTTGGGGCTAATGGCCGCGATGCTGGTTCAACTATCACACCATTTACAAAGGATGGAATTAATAAGGTTTCCTTAAATGGGTGTGATGCTCGCATATTCTGTTTTGGGGTCCGTATTGTTAAAAAGCTCAGCATGCCAGAGATCCTAAGCAGGATTCCAAAGGAGTCTGATGGTGAGCGTTTTGAGGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTAGAAGTTGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCGATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAGCCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAATTGAATGAACGATCAAGGAAGTGGCAGTGCCCCATATGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCTTACTTCAATTGTATCACTACTATGATGAAAAATTGTGGAGAAGAGATTGCAGAGATTGAGGTGAAACCTGATGGTTATTGGCGTGTCAAGGTTAAGAATGAAAGTGAACGCCGGGAGTTGGGGGATCTTGCTCAATGGCACCGTCCTGATGGATCTCTCTCTGTTTCTACTGATGAAGTCAAGAGAATGGAAAATTTAAAGCTCAAACAGGAATGTGTTTCAGAAAGTCCTATAGGTTTAAAACTTGGCATCAAGAAGAATAGTAATGGTAATTGGGAAGTCAGCAAACCTGAGAACACGTACACCTCTTCTGGTAATAGATTGAATGAGGATTTTGAAAATCCTGAACATGTTATTCCAATGAGCAGCAGTTCCACTGGAAGTGGCCGGGATGAAGATGATCCTAGCATAAATCAAGGTGGTGGTGGGCATATTGATTATTCTACAACCAATGGGATTGAGATGGATTCTGTGTTTAACAATAATATTGATTCAGCTTATGGATATTCTGTTCATAATGCTGCTGCTCCGATGGGTGATGCAGAAGTTATTATTCTTAGTGATTCAGAAGAAGACAATGATCTATTGATGTCTCCTATAGTTGGGTACACAAACGATCAAACTAGTGCTGCAGTTGATGGTTACTCAGTGCCACAGCCTGGAATTATTGATCCATATACAGAAGATCACAATCCTGGTGGAAATCCAGGCTTGGGAGTTTTTAATAACCCCAGGGCAGATGATTTTGGGATGCCCTCCCTTTGGCCATTGCAATCGGGAACTCAGCCAGTCTCAGGATTCCAATTATTCAGTTCTGATGTGGATGTATCAGATGCATTGGATGATTTACGAGGTGATATTAATTGCTCCTCATCACTGAATGGTTATTCGTTGGCTCCTGATACTGCTTTGGGATCTAGCACTCTTGTTCCAGGTTCCTCAACAGGTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCTGGAGAGGATCCTTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCTATGCACCATGAATTGAGAGATCATGCAGATGAATCAAATGGTGTCTTCACTGAGGATTGGATCTCTCTTACTCTTGGAGGTGGTGCCAGTGGCAGTAATGGTGACACTTCCGCTGCAAATGGGTTGAATTCCAGACCGCAAATTACATCCAGAGGAGATGCCACAGATTCTTTGACAGATACTGCTCCTTTGCTTCTTGGTATGAATGATGTTAGATCTGACAATGCTAGAAGGCAAAGATCAGATAGCCCTCTCTCAATTCCCCGCCAAAAACGTTCAATGCCCTTAATGCCACATTTTGTGCGTAGAAATTGA 2622 0.4165 MDLVASCKEKLQYFRIKELKEVLTQLGLSKQGKKLDLVDRILSILSDEQVYKSWAKKNAVGKEQVAKLVDDTYRKLQVSGAIDLASKGQGASDSSNVKIKGEIDDSFQSDTKIRCLCGSLLDTEPLVKCEDTRCHVSQHINCVIIPEKPIDGIPPVPDKFYCEICRLDRADPFWVSVMHLLFPVKLTTTYGPTDEGNIQSVEKTFQLSRANKELVSKSEYEVQAWCMLLNDKVSFRMHWPKYADLKINGLAVRAINRPASQLLGANGRDAGSTITPFTKDGINKVSLNGCDARIFCFGVRIVKKLSMPEILSRIPKESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVELNERSRKWQCPICLKNYALENIIIDPYFNCITTMMKNCGEEIAEIEVKPDGYWRVKVKNESERRELGDLAQWHRPDGSLSVSTDEVKRMENLKLKQECVSESPIGLKLGIKKNSNGNWEVSKPENTYTSSGNRLNEDFENPEHVIPMSSSSTGSGRDEDDPSINQGGGGHIDYSTTNGIEMDSVFNNNIDSAYGYSVHNAAAPMGDAEVIILSDSEEDNDLLMSPIVGYTNDQTSAAVDGYSVPQPGIIDPYTEDHNPGGNPGLGVFNNPRADDFGMPSLWPLQSGTQPVSGFQLFSSDVDVSDALDDLRGDINCSSSLNGYSLAPDTALGSSTLVPGSSTGRPDDDLNGGLVDNPLAFPGEDPSLQIFLPTKPAESSMHHELRDHADESNGVFTEDWISLTLGGGASGSNGDTSAANGLNSRPQITSRGDATDSLTDTAPLLLGMNDVRSDNARRQRSDSPLSIPRQKRSMPLMPHFVRRN 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00496 873 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Cca10g00496 873 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Cca10g00496 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Cca10g00496 873 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 812 - -
Cca10g00496 873 MobiDBLite consensus disorder prediction 508 562 - -
Cca10g00496 873 MobiDBLite consensus disorder prediction 724 748 - -
Cca10g00496 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 446 IPR013083 -
Cca10g00496 873 ProSiteProfiles Zinc finger SP-RING-type profile. 345 428 IPR004181 GO:0008270
Cca10g00496 873 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Cca10g00496 873 SMART PHD_3 114 166 IPR001965 -
Cca10g00496 873 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 812 - -
Cca10g00496 873 MobiDBLite consensus disorder prediction 535 550 - -
Cca10g00496 873 MobiDBLite consensus disorder prediction 508 526 - -
Cca10g00496 873 Pfam MIZ/SP-RING zinc finger 358 406 IPR004181 GO:0008270
Cca10g00496 873 MobiDBLite consensus disorder prediction 801 873 - -
Cca10g00496 873 Gene3D SAP domain 1 60 IPR036361 -
Cca10g00496 873 MobiDBLite consensus disorder prediction 801 826 - -
Cca10g00496 873 SMART sap_9 11 45 IPR003034 -
Cca10g00496 873 SUPERFAMILY SAP domain 1 64 IPR036361 -
Cca10g00496 873 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00496 Cca-Chr10 5169714 5182147 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00496 - K22403 gmx:100811996 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00496 10 5169714 5182147 Cca10g00496 10 5169714 5182147 ECH
Cca10g00496 10 5169714 5182147 Cca04g00749 04 7503278 7514047 PCT