Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00491 ATGAAGAGTGATACAAACAGCCCTACTTCCTCTCCCACATTTTCTCACTCTTCTAATAACAATATCGCTTCTTCCCCTCCCCAAGTTGTCATGAGCCCTTGTGCTGCTTGCAAAATTCTGAGGCGAAGATGTGCTGAAAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCACTGCCCACAGAGTCTTCGGTGCTAGCAACATCATCAAATTCTTGCAGGAACTTCCGGAGTTTCAAAGAGCTGACGCAGTGGCGAGTATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCAGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAGAAGCAAGTGAATGAACTTCAAGCACAATTAGCAAAGGCACAAGCTGAGGTTGTGGACATGCAATTCCAACAAGCCAATCTCTTGGCTCTAATTAGCATGGAAATGTCACCTACTCCACAGGAATCACCACAACAATCTGTCGACAACTTCATTTCAAGTCCTTCCCACAGCATTGACTATCAAAACAGTTGCAATTTCTTTGAGGAGATGGCCAAGGCCAACCTAAACTCTATGTGGGAGCCTCTTTAG 597 0.4539 MKSDTNSPTSSPTFSHSSNNNIASSPPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPEFQRADAVASMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVDMQFQQANLLALISMEMSPTPQESPQQSVDNFISSPSHSIDYQNSCNFFEEMAKANLNSMWEPL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00491 198 MobiDBLite consensus disorder prediction 1 24 - -
Cca10g00491 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 196 - -
Cca10g00491 198 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Cca10g00491 198 Coils Coil 112 139 - -
Cca10g00491 198 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Cca10g00491 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 12 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00491 Cca-Chr10 5113691 5115608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00491 29 198 AS2 family AT2G28500 65.027 3.59e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca10g00491 LOB 7.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00491 - - gmx:100819336 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00491 10 5113691 5115608 Cca10g00491 10 5113691 5115608 ECH
Cca10g00491 10 5113691 5115608 Cca04g00739 04 7381720 7384153 ECH
Cca10g00491 10 5113691 5115608 Cca04g00739 04 7381720 7384153 PCT