Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00486 ATGTTTTCCGAGAAAATGGAGCAGTTCATCGACAACTTGCCGCCGATGGATCTGATGCGATCCGAGAAGATGACCTTCGTTCAGCTCATCATCCCCGCCGAGTCCGCTCACCGCGCCATCTCCTATTTAGGCGAACTCGGCCTTCTCCAATTCCGCGATTTAAATGCTGATAAAAGCCCCTTCCAGAGAACATTTGTTAACCAGGTCAAGCGATGTGCAGAAATGTCAAGAAAGCTGCGCTTCTTCAAGGATCAAATCAGTAAAGCTGGCCTAATGTCTTCTTCTCTTACTGTATTGCAACCAGATATCGACTTGGAGGATTTAGAGATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGACAAACTTCGTCAATCATATAATGAACTCCTGGAATTCAAGATTGTATTAGAAAAGGCATGTGGTTTTCTTGTTTCAAGTCATGGCCGTGTGGTTTCAGAGGGAAGAGAACTACAAGAGAATGTATATTCAAATGATGCCTATGTTGAGACAGCATCTTTGCTTGAGCAGGAAATGAGGCCCCAGTCATCAAATTCGTCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAGCTTCTTAGGTTTGAAAGGATGTTGTTTCGTGCTACGAGAGGCAATATGCTTTTCAATCAGGCACCAGCTGATGAACGAATCATGGATCCTGTTTCATCTGAGATGATTGAAAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTTGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGTAAGCAGAGGCAAATAACTAGAGAGGTTTCATCTCGTCTTACAGATTTAGAGGCAACTTTGGAAGCTGGGATTAGGCACCGGAACAAGGCTCTAACTTCTGTAGCAGACCATCTAGCAAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTATGATACCCTGAATATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTCTGTTTGCAAAAGCACAGATGCAGGAGGCACTACAACGCGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCAATGGATGCAGTGGAATCACCACCAACATATTTTAGGACCAACACTTTCACAAGTCCATATCAAGAAATTGTTGATGCATATGGTGTTGCAAGGTACCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTGTGATGTTTGGGGACTGGGGTCATGGGATTTGCCTGCTACTAGGTGCATTGGTTCTTATAGCACGTGAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGGCGCTATGTGCTTCTTTTAATGGCAATATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTTTCTGTTCCTTTTCACATATTTGGTGCATCGGCTTACAAATGTCGCGATACTACATGCAGGGATGCACATACTATTGGCTTAGTCAAATACCAAGATCCATACCCATTTGGTGTGGATCCTAGTTGGCGTGGAAGTCGTTCAGAATTGCCTTTCCTGAACTCTATGAAGATGAAGATGTCCATTCTGTTTGGTGTGGCGCATATGAACTTAGGAATTATATTAAGTTATTTTAATGCTCGTTTCTTTGGAAGCTCACTGGATATAAGATACCAGTTTGTGCCACAGATGATTTTCCTTAATAGTCTATTTGGGTATCTTTCCCTTCTCATTATTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACAGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGCTATTGCTTTGGGCTGTAATTGCAGTTCCATGGATGCTTTTTCCAAAACCTTTTATACTAAAGAAGCTACATACTGAGAGATTTCAAGGTCGTAGTTATGGTATACTGAATACCTCTGAGGTGGATCTTGAGGCTGAGCCTGATTCTGCCAGAGAACACCATCATGAAGAATTCAATTTCAGTGAGGTCTTTGTTCACCAAATGATCCACGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGCCTTTGGGCATTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCTTGGGGGTATGACAATCTTGTCATTCGGTTGATAGGGCTAACTGTTTTTGCTTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTGAGTGCTTTTCTTCATGCCCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCTACAAGTTCAAGCCTTTTTCATTTGCTTCCTTAACTGAGGATGACGATTGA 2478 0.41 MFSEKMEQFIDNLPPMDLMRSEKMTFVQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLMSSSLTVLQPDIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLEKACGFLVSSHGRVVSEGRELQENVYSNDAYVETASLLEQEMRPQSSNSSGLRFISGIICKSKLLRFERMLFRATRGNMLFNQAPADERIMDPVSSEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLEAGIRHRNKALTSVADHLAKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLFAKAQMQEALQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTSPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAVMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMAIFSIYCGLIYNEFFSVPFHIFGASAYKCRDTTCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELPFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLWAVIAVPWMLFPKPFILKKLHTERFQGRSYGILNTSEVDLEAEPDSAREHHHEEFNFSEVFVHQMIHAIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLIGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFKPFSFASLTEDDD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00486 825 PIRSF ATP6V0A1 14 825 IPR026028 GO:0000220|GO:0046961
Cca10g00486 825 PANTHER VACUOLAR PROTON ATPASES 10 825 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cca10g00486 825 Coils Coil 105 132 - -
Cca10g00486 825 PANTHER VACUOLAR PROTON ATPASE A1 10 825 - -
Cca10g00486 825 Pfam V-type ATPase 116kDa subunit family 42 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00486 Cca-Chr10 5027917 5042058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00486 6 818 Primary Pumps ATPases(2) AT2G28520 81.718 0.0 1379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00486 K02154 - gmx:100776037 1585.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00486 10 5027917 5042058 Cca10g00486 10 5027917 5042058 ECH
Cca10g00486 10 5027917 5042058 Cca04g00731 04 7280610 7294478 PCT