LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00482	ATGTTGGATCTTAACCTGAACGCCGAGTTGACTCATAACGACGGCTCGCTGGTTCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGAAACTTCGAATTCCTCCGTCGTGAATGCGGAGGGTTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACATGTTCACCTTCAACTTCGGAATCCTTAAGGTGGAGGGCGTGAACGACGTCGTTGCGGCGACGCAGGAGCTGTTTCCGGTGAGCGCGGAGAATTGGCAGGGGCAGAGTTCGACGTCGTCGTTTCAGGCTAAGACGAGTTTGATGGATCTCTCGGTGGATCATCAAAACGGCGAGGTGAAGGTTGTTCAGGTTCAGCAACAGCAGCCTCAGGTGAAGAAAAGTAGGAGAGGTCCACGCTCTCGGAGTTCTCAGTACAGAGGTGTTACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTGTATTTAGGTGGATTTGACACTGCTCATGCCGCTGCTAGGGCCTATGATCGAGCCGCTATTAAGTTCAGGGGACTTGATGCTGACATCAATTTTAATCTTGTTGATTATGAGGACGATCTAAAACAGATGAAGAATCTTTCCAAAGAGGAATTCGTGCACATACTCCGCCGCCACAGTACAGGTTTCTCAAGGGGGAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCAGTGACAAACTTTGAGCCAAGTACATATGAGAGCGAGATGAAACCTGCAGCAATTAATGAAGGCAGGTTTGTATTTGTCTTCAACTCAGGTGGCAGTCACGATCTTGACCTCAATCTGGGCATAGCGACCCCAGGGTACGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGCCCGTCCCTTACAACACGTATCCCGGAAGAAGTTCGAGGATGGAGACTACTGCTAATTCGGTTATTGGTGATCCATCTTTGAAAAGGCTGCTTGTAACTGAAGAGCAGCGTCCTTCTGTATGGAATGCCGCATATTCCAATTCATTTCCCAATCTGGGAAGAGCAGAGAGAATTGGCATAGACCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACGCATAGTGCCACCCCAGTACCACCATTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTATCCACCAACTGCCATCTTTCCAACAAAATCAATGAACTCAATTCCCCAGAGCCTCTATTTCTCTTCATCCAGTACACCAGGTAGCAATGCACCTCAATTCTATTATGAGGTGAAGTCCCCGCAGGCACCATCATAG	1440	0.4938	MLDLNLNAELTHNDGSLVLLDKFPEASSETSNSSVVNAEGSSNEDSCSTRAGDMFTFNFGILKVEGVNDVVAATQELFPVSAENWQGQSSTSSFQAKTSLMDLSVDHQNGEVKVVQVQQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPAAINEGRFVFVFNSGGSHDLDLNLGIATPGYGPKENRGHLQFQPVPYNTYPGRSSRMETTANSVIGDPSLKRLLVTEEQRPSVWNAAYSNSFPNLGRAERIGIDPSKGVPNWAWQTHSATPVPPFSTAASSGFSISATYPPTAIFPTKSMNSIPQSLYFSSSSTPGSNAPQFYYEVKSPQAPS	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g00482	479	ProSiteProfiles	AP2/ERF domain profile.	229	286	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	MobiDBLite	consensus disorder prediction	115	138	-	-
	Cca10g00482	479	CDD	AP2	137	192	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	SUPERFAMILY	DNA-binding domain	228	287	IPR016177	GO:0003677
	Cca10g00482	479	MobiDBLite	consensus disorder prediction	456	479	-	-
	Cca10g00482	479	ProSiteProfiles	AP2/ERF domain profile.	137	193	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	SUPERFAMILY	DNA-binding domain	136	193	IPR016177	GO:0003677
	Cca10g00482	479	SMART	rav1_2	229	292	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	SMART	rav1_2	137	199	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	467	-	-
	Cca10g00482	479	CDD	AP2	228	288	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	Pfam	AP2 domain	137	185	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	Pfam	AP2 domain	228	278	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2	1	467	-	-
	Cca10g00482	479	MobiDBLite	consensus disorder prediction	456	470	-	-
	Cca10g00482	479	Gene3D	AP2/ERF domain	228	287	IPR036955	GO:0003700\|GO:0006355
	Cca10g00482	479	Gene3D	AP2/ERF domain	136	195	IPR036955	GO:0003700\|GO:0006355
	Cca10g00482	479	PRINTS	Ethylene responsive element binding protein signature	230	241	IPR001471	GO:0003700\|GO:0006355
	Cca10g00482	479	PRINTS	Ethylene responsive element binding protein signature	268	288	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00482	Cca-Chr10	4992733	4996232	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00482	73	321	AP2-EREBP Transcription Factor Family	AT4G36920	67.188	1.68e-95	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Cca10g00482		AP2	2.8e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00482	K09284		-	gmx:100777102	787.719

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca10g00482	10	4992733	4996232	Cca10g00482	10	4992733	4996232	ECH
	Cca10g00482	10	4992733	4996232	Cca04g00723	04	7216991	7221212	ECH
	Cca10g00482	10	4992733	4996232	Cca04g00723	04	7216991	7221212	PCT