Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00477 ATGGGTTGCTTTCGTTGCACAGGCAAATCAAGCAAAAAATCCAACAAACACATTAATCGCAGTGAGAAGACCAACAACCACACTGTTGCTGATAAGGTCAAATTTGATTTGAATGCGAAAGGCAAAAAAGAAGATAGTAGTCCTAAGCCTGATCAGCTATCTCTGGACGTGAAGAATTTGAATTTAAAAGATGTTTCCAATGAAGGAAAACTTAACGGTTACAAGGCGCGGACATTTACTTTTGATGAGCTTGTAGTTGCAACAGGGAATTTTAGGGCAAATTGCTTTCTCGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGGCTCATAGAGAAAATAAATAAGGATGTAGCAATAAAGCAACTAGACCCTTATGGGCATCAAGGAGTTAGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCACCCTaatttggtcaagctaattgggttttgtgctgagggggagcagaggctattggtttatgagtacatgccaTTGGGATCTTTGGAGAAACATTTGCAAGATCTTCCGCCAGGTAGAAAACCACTTGATTGGAATACTAGAATGAAAATAGCAGCGGGTGCAGCTAGAGGTTTAGAGTATTTGCATGATAAAATGAAGCCTCCTGTCATATATCGGGATCTGAAATGCTCGAATATTCTGTTAGGAGAGGGATTTCATCCCAAGTTATCTGATTTTGGCTTGGCTAAAGTAGGACCAAGTGGTGATAAAACCCACGTATCAACAAGAGTTATGGGAACATATGGGTATTGTGCCCCAGATTATGCAATGACGGGTCAATTGACGTTCAAGTCTGATATTTATAGCTTTGGAGTTGTTCTTTTGGAGATTATCACAGGCAGAAAGGCCATCGACAACTCAAAATCTGCTAAAGAACAAAATCTAGTTGCATGGGCAAGGCCATTATTCAAAGACAGAAAAAGATTCTGTGAGATGGTTGACCCGTTGCTCGAAGGCAAGTATCCAGTGAGAGGTTTGTACCAAGCTCTTGCTATCGCTGCTATGTGTGTTCAAGAACAACCTAATATGAGGCCTGTCGTAGCCGATGTGGTTACAGCTCTAAATTACCTGGCGACCCAGAAATATGATCCCCAAATTCATTCGGTTCAAAGAAAAGGCGCATCTTCTCCAGGCGTGAGAAGCAATGGTCATGGACGTAGTCCTGGTAATGGTTCTGATCCTAGAGCAAGAAGCGATGCTCATGGACGTTCCGGTAACAGTGATTCTGAGACAGAGTGTGATCCCCAAGTTCATTCAGTACAAAGCTCTAGAAATGGTGCATCTTCTCCAAGAGTGAGAAGTAATGGTCATAGCAGTGGCTCCGAGTCAGAAAGCTCTAGAAAAGGTCTATCTTCTTCAAGACCGAGAAGTGATGGTCATAGACATTTTGCTAGTAATGGTTATGATTCAGACGGTTTTGGAGATTAG 1461 0.4004 MGCFRCTGKSSKKSNKHINRSEKTNNHTVADKVKFDLNAKGKKEDSSPKPDQLSLDVKNLNLKDVSNEGKLNGYKARTFTFDELVVATGNFRANCFLGEGGFGKVYKGLIEKINKDVAIKQLDPYGHQGVREFVVEVLTLSLADHPNLVKLIGFCAEGEQRLLVYEYMPLGSLEKHLQDLPPGRKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGFHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAIDNSKSAKEQNLVAWARPLFKDRKRFCEMVDPLLEGKYPVRGLYQALAIAAMCVQEQPNMRPVVADVVTALNYLATQKYDPQIHSVQRKGASSPGVRSNGHGRSPGNGSDPRARSDAHGRSGNSDSETECDPQVHSVQSSRNGASSPRVRSNGHSSGSESESSRKGLSSSRPRSDGHRHFASNGYDSDGFGD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00477 486 Pfam Protein tyrosine and serine/threonine kinase 96 363 IPR001245 GO:0004672|GO:0006468
Cca10g00477 486 MobiDBLite consensus disorder prediction 15 30 - -
Cca10g00477 486 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 383 - -
Cca10g00477 486 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00477 486 Gene3D Phosphorylase Kinase; domain 1 62 167 - -
Cca10g00477 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Cca10g00477 486 MobiDBLite consensus disorder prediction 420 459 - -
Cca10g00477 486 SMART serkin_6 91 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00477 486 CDD STKc_IRAK 97 366 - -
Cca10g00477 486 PANTHER OS07G0668900 PROTEIN 1 383 - -
Cca10g00477 486 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Cca10g00477 486 SUPERFAMILY Protein kinase-like (PK-like) 77 377 IPR011009 -
Cca10g00477 486 MobiDBLite consensus disorder prediction 378 486 - -
Cca10g00477 486 MobiDBLite consensus disorder prediction 460 476 - -
Cca10g00477 486 MobiDBLite consensus disorder prediction 378 399 - -
Cca10g00477 486 Gene3D Transferase(Phosphotransferase) domain 1 168 386 - -
Cca10g00477 486 MobiDBLite consensus disorder prediction 6 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00477 Cca-Chr10 4903116 4906937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00477 72 370 Glycoside Hydrolase AT3G07070 64.883 2.30e-142 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca10g00477 PK_Tyr_Ser-Thr 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00477 - - gmx:100794680 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00477 10 4903116 4906937 Cca10g00477 10 4903116 4906937 ECH
Cca10g00477 10 4903116 4906937 Cca04g00716 04 7071883 7076580 ECH
Cca10g00477 10 4903116 4906937 Cca04g00716 04 7071883 7076580 PCT