Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00475 ATGGCAGAACGAGGAGGCGGCGATCGCGGCGGCTTCGGTCGTGGTTTCGgcgggcgtggacgcggaggagaccgcgggcgcgggcggcggcgaggCCCTCGTCGCGAAGAGGAGGAGAAGTGGGTCCCAGTGACGAAGCTAGGTCGTCTGGTGAAAGAGGGAAAAATCCGAAGCCTGGAACAGATCTACCTCCACTCTCTCCCCATAAAGGAGCACCAGATCGTGGACACCCTCGTGGGCCCCACCCTCAAGGACGAGGTCATGAAAATCACGCCGGTTCAGAAGCAGACCCGGGCCGGCCAGCGAACCCGGTTCAAGGCTTTTGTcgtcgtcggcgacggcaacggccacgtcggactcggcgtcAAGTGCAGCAAGGAGGTGGCCACCGCCATTCGCGGCGCCATTATTCTGGCGAAGCTTTCCGTTATCCCCGTGAGGCGTGGGTACTGGGGGAACAAGATTGGGAAGCCCCACACCGTTCCGTGCAAGGTTACGGGCAAGTGCGGCTCCGTTACCGTTAGGATGGTTCCCGCGCCTCGGGGTTCGGGAATCGTGGCCGCTAGGGTTCCCAAGAAGGTGCTCCAGTTCGCGGGGATCGAAGATGTTTTCACTTCCTCCAGAGGATCCACCAAAACCCTCGGCAACTTCGTTAAGGCTACTTTTGACTGTTTGATGAAAACCTACGGTTTTCTGACACCAGAGTTCTGGAAGGAAACTCGCTTTAGCAAATCTCCATTCCAAGAGTACACAGATCTCTTGGCAAAACCAACAGGAAAGGCTCTAATCTTGGAGGAAGAAAGGGTGGATGCTTGA 816 0.5012 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIVDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVDA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00475 271 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 269 - -
Cca10g00475 271 TIGRFAM uS5_euk_arch: ribosomal protein uS5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Cca10g00475 271 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca10g00475 271 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
Cca10g00475 271 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cca10g00475 271 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Cca10g00475 271 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca10g00475 271 PANTHER RIBOSOMAL S SUBUNIT 1 269 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca10g00475 271 Gene3D - 146 239 IPR014721 -
Cca10g00475 271 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Cca10g00475 271 MobiDBLite consensus disorder prediction 1 39 - -
Cca10g00475 271 Gene3D - 40 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00475 Cca-Chr10 4889691 4891891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00475 37 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 90.583 3.85e-151 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00475 K02981 - gmx:100820352 478.789