Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00474 ATGGTGATGGGCCAGTGCCGTAAAAAGGGTAATGCAAAGATCTTGTCCAGGAAAGATGAATTATCAAGAATATATAAGTACATGGCGAGCTGGTTATATGGGAGCCATGTGAAAAACAAATTAGCAAATTTCAATCTTCCTGATCCACCTCCTTCACACAAACACAACGCAGCTTCAGCAAAGTGGGAAGAGAGAGAGAGGGAGATAGGTAGCGATGGAGCAATCAGAAAAAATAGCGAAGAAAGTATCATCAGCGAGAACATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAACCGCCACCTCAACCAACGCGCGCGTGCGGCCATCACTCCGCCCGCCGGAGAATGCGGCGCCGCCGCACAGAGAGCCGCCGAGTGGGGCCTCGTGCTCCGCACCGACACCGAGACTGGCAAGCCGCAGGGCGTCGCTGCCCGGAACTCCGGCGGCGAGGAACCCAACGCCAAACTCGCCGCCTCTTCCAGAAGGAACTCTCAGAACTCCAGCAGAACCTCCGGCGAGTCTTCcgacggaggcggcggcggcggtggGATTCCGAGAGTTTCGGAGGACGTGATGGGCGCGTTGTCGGCTTTCCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTCTATGCAAGTGCCGGTTTTTTTAAAATGACGGGCTATACGTCCAAGGAAGTTATCGGAAGAAACTGTCGGTTTTTACAGGGCGCGGACACGGATCCCAATGAAGTGGCAAAGATAAGGGAAGCATTGGAAGCGGGGAAAATTTACTGCGGAAGGCTTCTAAATTACAAGAAAGATGGAACACCTTTCTGGAACCTTCTCACTATTTCACCCATTAAGGATGACGATGGCAAAGTGCTCAAATTCATTGGAATGCAAGTGGAGGTTAGCAAGCATACAGAGGGGTCCAAGGAGAAGGTGCTACGTCCCAATGGATTGCCCGGATCCTTGATTCGATACGATGCTCGTCAGAAAGAGAAGGCTACAAGTTCAGTATCTGAGTTGGTTCAAGCCATTAAGCGTCCTCGAGCATTAAGTGAATCAGCGAGTCGTCCCTCTGTCAGAAAATCAGGATATACTCAGgaagaaaaaatagaagaagaagatgaagagaaagcaggacaaacattaagaagaaAATCTGAGAGTGGGACTTCATTTGGACGAAAATTAGAAGAAGGAAATAAAATTTCAATGCAACGAACTAGTGAGCCACCTGAAAATAAACACAAAAGTTCTCATCGTCGTTCTTTCATGGGGTTCAGGAGGAAAAGTCAATCCAATGATGAAAGCATGAATAATGAAGTTATTGAGGATGTTAGCTCTGAGAGTGAGGATGATGAGAGGCCTGATAGTTTTGAGTTAGATGACAAAGAAAAGCAGAGAGAAAAGCGAAAAGGCCTTGATCTTGCTACCACACTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCAATAATATTCGCATCAGATAGCTTCTTGGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTACAAGGACCTGAAACTGATCGTGCAACTGTGAGAAAAATCCGAGAGGCGATTGATAGCCAAACAGAAGTTACTGTGCAACTAATTAATTATACAAAGAGTGGAAAGAAGTTTTGGAACCTGTTTCATTTGCAACCCATGCGTGATCAGAAGGGGGAAGTGCAGTATTTTATTGGTGTTCAACTAGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATCGCAGAAGATACTGCAAAGGAAGGAGAACAATTGGTCAAACAAACAGCAGAAAATGTTGATGAAGCAGTGAGAGATCTTCCGGATGCAAATATGAAACCAGACGATTTATGGTTAAATCATTCAAAAGTAGTTTACCCCAAACCTCATAGGAAGGATGATCCTGCTTGGAGAGCTATCCAAAAGGTTTTGGAAAGTGGAGAACAAATAGGCTTAAAGCACTTTAGGCCAATTAAACCATTGGGCTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTATGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAACCGCAACAAGGTGCATAGAGCTTGTGCAGAAAGAGAAATCCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTTTCCTGGGGGAGAACTATTTCTGCTTCTTGACCGTCAACCAACTAAGGTTCTCAAGGAAGACGCTGTGAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTACCTTCATTGCCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTTTTAATCCAAAGCAATGGGCACGTGTCTCTAACAGATTTCGATTTGTCATGTTTAACATCTAGCAAACCACAGCTTATAATTCCAACTATCAATTCAAAGAAGAAAAAGAAGAAACAACTGAAAAGTCAAGAGGTTCCAATGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGGACGGAAGAGTACATAGCTCCGGAAATTGTAAGTGGTTCAGGTCATACTAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTACACACCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAGTTTCCCAAAAGTAAGCCGGTAAGTCTCCAAACAAAACAACTAATTTACTGGTTATTGCAAAGAGATCCCAAAGACAGATTGGGTTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTTTTTCGAGGTGTCAATTGGGCACTAGTTCGTTGCATGCAACCTCCTGAGCTTGATGCCCCGCTCTTACTAACAACTgaagaagaagaagaaaaaaaagTCAAAGATACAAATCCTGAACTAGAGGATCTACAAACAAATGTTTTTTGA 3051 0.4241 MVMGQCRKKGNAKILSRKDELSRIYKYMASWLYGSHVKNKLANFNLPDPPPSHKHNAASAKWEEREREIGSDGAIRKNSEESIISENIISERSTWLTRSVQPNRHLNQRARAAITPPAGECGAAAQRAAEWGLVLRTDTETGKPQGVAARNSGGEEPNAKLAASSRRNSQNSSRTSGESSDGGGGGGGIPRVSEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNEVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGSKEKVLRPNGLPGSLIRYDARQKEKATSSVSELVQAIKRPRALSESASRPSVRKSGYTQEEKIEEEDEEKAGQTLRRKSESGTSFGRKLEEGNKISMQRTSEPPENKHKSSHRRSFMGFRRKSQSNDESMNNEVIEDVSSESEDDERPDSFELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDSQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDLPDANMKPDDLWLNHSKVVYPKPHRKDDPAWRAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELCGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYFPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPTINSKKKKKKQLKSQEVPMFMAEPMRASNSFVGTEEYIAPEIVSGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQTKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMQPPELDAPLLLTTEEEEEKKVKDTNPELEDLQTNVF 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00474 1016 CDD PAS 219 308 IPR000014 -
Cca10g00474 1016 Gene3D PAS domain 206 363 - -
Cca10g00474 1016 CDD PAS 493 593 IPR000014 -
Cca10g00474 1016 ProSiteProfiles PAC domain profile. 266 320 IPR000700 -
Cca10g00474 1016 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Cca10g00474 1016 SMART pac_2 555 597 IPR001610 -
Cca10g00474 1016 SMART pac_2 269 311 IPR001610 -
Cca10g00474 1016 ProSiteProfiles PAS repeat profile. 478 551 IPR000014 -
Cca10g00474 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 494 593 IPR035965 -
Cca10g00474 1016 Gene3D Transferase(Phosphotransferase) domain 1 763 981 - -
Cca10g00474 1016 TIGRFAM sensory_box: PAS domain S-box protein 219 312 IPR000014 -
Cca10g00474 1016 TIGRFAM sensory_box: PAS domain S-box protein 503 593 IPR000014 -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 354 478 - -
Cca10g00474 1016 PANTHER FLIPPASE KINASE 1-RELATED 140 1016 - -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 162 180 - -
Cca10g00474 1016 PANTHER PHOTOTROPIN-1 140 1016 - -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 382 426 - -
Cca10g00474 1016 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 305 IPR035965 -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 436 450 - -
Cca10g00474 1016 Gene3D Phosphorylase Kinase; domain 1 678 762 - -
Cca10g00474 1016 ProSiteProfiles PAC domain profile. 552 606 IPR000700 -
Cca10g00474 1016 Pfam PAS domain 501 593 IPR000014 -
Cca10g00474 1016 Pfam PAS domain 213 309 IPR000014 -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 140 191 - -
Cca10g00474 1016 Gene3D PAS domain 467 631 - -
Cca10g00474 1016 MobiDBLite consensus disorder prediction 995 1016 - -
Cca10g00474 1016 SUPERFAMILY Protein kinase-like (PK-like) 662 990 IPR011009 -
Cca10g00474 1016 ProSiteProfiles Protein kinase domain profile. 679 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00474 1016 SMART pas_2 194 263 IPR000014 -
Cca10g00474 1016 SMART pas_2 480 549 IPR000014 -
Cca10g00474 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Cca10g00474 1016 CDD STKc_phototropin_like 677 988 - -
Cca10g00474 1016 SMART serkin_6 679 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00474 1016 Pfam Protein kinase domain 681 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00474 1016 ProSiteProfiles PAS repeat profile. 192 265 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00474 Cca-Chr10 4868260 4886385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00474 117 1016 AGC Kinase Gene Family AT3G45780 74.807 0.0 1340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca10g00474 Pkinase 8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00474 K20715 - gmx:100817565 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00474 10 4868260 4886385 Cca10g00474 10 4868260 4886385 ECH
Cca10g00474 10 4868260 4886385 Cca04g00713 04 7044621 7060008 PCT