Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00468 ATGTATGCACACTCCAGCACCACCTCATCACCCCTCCCTTCCCCTTCCTCTCTCTTCCCTGACATCACCGAGTTCGATGTCCTCTCCCAACTCAACAACTTGGACAGTACTAGTTGTTACTACAACAGCGCTAGCAACAATAATAGTAACTGTAGCAGTTACGGTGGGTCACCCTCTCCCACTTCCAACTTGATGCAGAGGAGTGTTAGCGCCCATTCCTTCAACTACAACAATGGGACCCACCACCCTCTTTCTCCTCTCTTCGCTGAATTGCTCCACGACACTCCCGTTAGGAGAGTTTGCAGCACCGGTGATCTTCAGAGGATTAATGGAGTGCTACATAATCATCACACGGATAGTCCATTATCAAGTGAAAGTAGTATGATCATAGAAGGAATGAGCAGAGCCTGTCGATATAGCCCCGAGGAGAAGAAAGTGAGAATTGAAAGATACAGAAGCAAGAGGAACCAGCGGAACTTCAATAAGAAAATTAAGTATGCTTGCAGGAAGACATTAGCAGATAGCAGGCCACGCATTAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACAGTACAATTCAGTGGAGCCAAATTGGTGGTGGagaggaagaggatgaagaagaagagaaTTGGGTGAATATCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGCAATTCTTCCTATGGTCTATTCTATTAG 720 0.4361 MYAHSSTTSSPLPSPSSLFPDITEFDVLSQLNNLDSTSCYYNSASNNNSNCSSYGGSPSPTSNLMQRSVSAHSFNYNNGTHHPLSPLFAELLHDTPVRRVCSTGDLQRINGVLHNHHTDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSTIQWSQIGGGEEEDEEEENWVNILDSLVAANFAQESQGNSSYGLFY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00468 239 PANTHER CCT MOTIF PROTEIN 3 239 - -
Cca10g00468 239 Pfam CCT motif 146 186 IPR010402 GO:0005515
Cca10g00468 239 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 239 IPR045281 GO:0009909
Cca10g00468 239 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00468 Cca-Chr10 4799386 4801766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00468 140 200 C2C2-CO-like Transcription Factor Family AT5G15850 42.623 1.83e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca10g00468 CCT 8.5e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00468 - - gmx:102661609 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00468 10 4799386 4801766 Cca10g00468 10 4799386 4801766 ECH
Cca10g00468 10 4799386 4801766 Cca04g00709 04 6983513 6993444 PCT