Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00457 ATGGGTCGACTTGTTTGGAAAGAGAAGGATAATTTAGCTGCGACGAATATAGTTGAGAAAAAGAAACGGGTCCACTGGACAAGAGAAGAACACTGGTTATTTCTGAAAGGCGTACATAAATATGGTAGAGGAAATTGGAAACACATTGCCCTGCATGTTGTGAAGACAAGATCTTCCAGCCAAATTGCTAGCCATGCCCAAAAGCATTATCTCCGCCAAGAAAGTGTCAAACAGAACAAGAAGAGGAAAAGATCAAGCATCCATGACATGACATTAGACTCTCACTTGCTCTCTTTAATTTGGAACAATTTTCCAATCCAATCCCTCAAACAGAAAAAAATGCCACACTCACCAAGTCATCACAACTCCACAGATCAACCCAACCCAATCCAACAATTACCATGTCACCACCAACTTCCCCTTTTCATTGACCAGCATTATACCAGGGTTCAACACCACCTTGACCAACACATGTTACAAGAATTAGAACAAGAGTTGAATCCACCACATAATATTTCACGATATGAAATGAGAGGCTTCAAGAATTGTGACTTCATGTAA 561 0.4029 MGRLVWKEKDNLAATNIVEKKKRVHWTREEHWLFLKGVHKYGRGNWKHIALHVVKTRSSSQIASHAQKHYLRQESVKQNKKRKRSSIHDMTLDSHLLSLIWNNFPIQSLKQKKMPHSPSHHNSTDQPNPIQQLPCHHQLPLFIDQHYTRVQHHLDQHMLQELEQELNPPHNISRYEMRGFKNCDFM 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00457 186 Pfam Myb-like DNA-binding domain 23 69 IPR001005 -
Cca10g00457 186 ProSiteProfiles SANT domain profile. 26 74 IPR017884 -
Cca10g00457 186 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 13 117 - -
Cca10g00457 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Cca10g00457 186 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 73 IPR006447 GO:0003677
Cca10g00457 186 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 117 IPR043363 -
Cca10g00457 186 Gene3D - 24 76 - -
Cca10g00457 186 MobiDBLite consensus disorder prediction 110 131 - -
Cca10g00457 186 SMART sant 22 72 IPR001005 -
Cca10g00457 186 MobiDBLite consensus disorder prediction 64 86 - -
Cca10g00457 186 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Cca10g00457 186 CDD SANT 26 69 IPR001005 -
Cca10g00457 186 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00457 Cca-Chr10 4699906 4700668 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g00457 Myb_DNA-binding 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00457 - - tcc:18590151 101.293