Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00448 ATGGCTCCTAAAGCTGATAGTTCGAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAACTGCCAAGGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGCAAAGAAGATCCGAACAACTGTTACCTTCCACAGGCCAAAGACATTGAAGAAGGATAGGAACCCCAAATACCCACGCATTAGTGCTCCACCTAGGAATAAGCTTGACCACTATCAGATTTTGAAATATCCTCTCACAACTGAGTCTGCTATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTCGACTTAAGAGCCGACAAGAAGAAGATCAAGGATGCAGTGAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTCAGGTTGACGCCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAA 462 0.4351 MAPKADSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTTVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00448 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cca10g00448 153 Pfam Ribosomal protein L23, N-terminal domain 14 63 IPR005633 -
Cca10g00448 153 Gene3D - 34 153 IPR012677 -
Cca10g00448 153 TIGRFAM uL23_arch: ribosomal protein uL23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Cca10g00448 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca10g00448 153 MobiDBLite consensus disorder prediction 1 16 - -
Cca10g00448 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 -
Cca10g00448 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca10g00448 153 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g00448 153 MobiDBLite consensus disorder prediction 44 64 - -
Cca10g00448 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cca10g00448 153 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00448 Cca-Chr10 4630309 4631693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00448 1 153 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 3.32e-68 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00448 K02893 - gmx:100785534 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00448 10 4630309 4631693 Cca10g00448 10 4630309 4631693 ECH
Cca10g00448 10 4630309 4631693 Cca04g00687 04 6719752 6721794 ECH
Cca10g00448 10 4630309 4631693 Cca04g00687 04 6719752 6721794 PCT