Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00447 ATGGAACCTCCCTCGTCTTCCAGATTCAATTATCACGAGAATTATGATGAGTTGAGGCAAAAGCTTTTGGTAATGACAGGGGAACTGGAGACAATGAAGAACGTTCAGAGGGAACTGCTGAATCTGCTGGATATGGCTTATAAAGAGAGAGATGAAGCGAAAGAAAAGCTTGAAAAACTAAAAAATTTCACAGCCCAAAATATCGTTACTAATTCAACGGTGATTCCTCAACCAACGAAAGCAAACTCGAGCATCACGGAATCCAACAGCCCCTCGCATGATTCCCTTCTGGAGGCAGTTTCTCCGGTGGAATTCCCCAACGTTGTGGACTCCCAAAACAGGTGTTACCTAAACCAGAACAATAACCCTTTGGTTCATCGCGCACGTGTTCAGAATCCCACGTGCGATTTTGGGACCCAAGTGATCGAATGCATTGCCAGGGGAAAAGTCTTGCCGCGCCAGGGTGAGCTTCTCAAGACCGTCATGGACGCCGGCCCATTGCTAAAGACACTCCTCGTGGCGGGCCCACTTCCCACGTGGCGAAACCCCCCTCCGGCCCAGGCCATTAGCATTCCTCCCCTCAAAGTTCAAAACTTTGGGTCTTCCAATAATTTTAATCCGCTTCAGAGTGTTGCTGTTGCCAACAATGCATTGCAGCCGATTCAAAATGCTACTTGCAAGAACCTTGCTCCATCGAGATTGAACCGTTCAAACCCTGGTAGGAACGGGGTTGAAGAGGAAATAATTCCTGATGAGTACTCGATGGAGATTACAAGTGGTAACATAGTGATAAACTCTCTTCCGGTTTTTCAGATTAAGAAAGGGGAAGAGATGGCGGTTAACGTGGAGTGTGCGATTTGTTTGGGGGAATTTGAAGAAGGGGAATGGATAAAGCTTCTACCGAATTGCACACACGGCTTCCACGTGTCATGCATTGACACGTGGTTTCGGTCTCATTCAAATTGCCCCCTTTGCAGATCTTGTGTGGCTCATTACACAGATTCTTGTGAGAGGGAAGAGTCGGAAGAATTTTCCACGGGAACTGATGCGCATTTCCAATCTGTTCCTTCTGAAATCTCTCCAAATTTGGAGATTGTACACCACCACTGTCCTCATTAA 1119 0.4683 MEPPSSSRFNYHENYDELRQKLLVMTGELETMKNVQRELLNLLDMAYKERDEAKEKLEKLKNFTAQNIVTNSTVIPQPTKANSSITESNSPSHDSLLEAVSPVEFPNVVDSQNRCYLNQNNNPLVHRARVQNPTCDFGTQVIECIARGKVLPRQGELLKTVMDAGPLLKTLLVAGPLPTWRNPPPAQAISIPPLKVQNFGSSNNFNPLQSVAVANNALQPIQNATCKNLAPSRLNRSNPGRNGVEEEIIPDEYSMEITSGNIVINSLPVFQIKKGEEMAVNVECAICLGEFEEGEWIKLLPNCTHGFHVSCIDTWFRSHSNCPLCRSCVAHYTDSCEREESEEFSTGTDAHFQSVPSEISPNLEIVHHHCPH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00447 372 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 7 316 - -
Cca10g00447 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 335 IPR013083 -
Cca10g00447 372 Coils Coil 36 63 - -
Cca10g00447 372 CDD RING-H2_PA-TM-RING 283 326 - -
Cca10g00447 372 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 7 316 IPR012862 -
Cca10g00447 372 ProSiteProfiles Zinc finger RING-type profile. 284 326 IPR001841 -
Cca10g00447 372 Pfam Ring finger domain 283 326 IPR001841 -
Cca10g00447 372 MobiDBLite consensus disorder prediction 74 94 - -
Cca10g00447 372 SUPERFAMILY RING/U-box 276 333 - -
Cca10g00447 372 SMART ring_2 284 325 IPR001841 -
Cca10g00447 372 Pfam Protein of unknown function (DUF1635) 14 202 IPR012862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00447 Cca-Chr10 4623844 4627210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00447 263 334 C3H Transcription Factor Family AT5G10380 54.167 2.61e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00447 - - ccaj:109806720 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00447 10 4623844 4627210 Cca10g00447 10 4623844 4627210 ECH
Cca10g00447 10 4623844 4627210 Cca04g00685 04 6715157 6717911 PCT