Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00446 ATGCCGATTTCTAAAATTGCCATTGGAAATTCTACGGAGTTGAGCCAAGCTGATGCCCTTAAGGCTGCCCTTGCTGAGTTCATCTCAATGCTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCATGGCTTATAATAAGTTGACAAACAATGGTTCAGCGACAGCAGCAGGGTTGGTGGCAGCATCACTGTCACATGCCTTTGCTCTTTTTGTTGCTGTGTCTGTTGGTGCAAACATATCTGGTGGTCATGTGAACCCTGCTGTGACATTTGGTGCCTTTGTTGGTGGCCACATTACTCTTTTTAGAAGCATATTGTACTGGATTGCTCAGTTGCTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGATTGGAAACATGTGCATTTGCACTGTCTTCTGGGGTGGGAGCAGCGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGTTTGGTGTACACGGTGTATGCAACTGCAGTGGATCCAAAGAAGGGTGAGGTTGGCATAATTGCTCCCATTGCAATTGGTTTCATTGTGGGTGCTAACATCTTGGCCGGTGGTGCATTTGACGGTGCTTCCATGAACCCTGCAGTGTCTTTTGGGCCTGCTGTCGTGAGTTGGACCTGGGATAACCACTGGGTTTATTGGGCCGGCCCATTCATTGGTTCTGCTATTGCTGCTCTTGTCTACGAGATTTTCTTCATTACCCCAAACACTTATGAACAGCTCCCTGTCACGGATTATTAG 759 0.4743 MPISKIAIGNSTELSQADALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATAAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETCAFALSSGVGAANALVFEIVMTFGLVYTVYATAVDPKKGEVGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWDNHWVYWAGPFIGSAIAALVYEIFFITPNTYEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00446 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cca10g00446 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Cca10g00446 252 SUPERFAMILY Aquaporin-like 16 243 IPR023271 -
Cca10g00446 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Cca10g00446 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00446 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00446 Cca-Chr10 4595648 4597014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00446 1 252 Major Intrinsic Protein MIP AT4G01470 77.778 7.74e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00446 K09873 - gmx:547794 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00446 10 4595648 4597014 Cca10g00446 10 4595648 4597014 ECH
Cca10g00446 10 4595648 4597014 Cca04g00684 04 6698866 6699845 ECH
Cca10g00446 10 4595648 4597014 Cca04g00684 04 6698866 6699845 PCT